RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PSMC4P43686 418 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CASP4P49662 377 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 STAT5BP51692 787 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 POLGP54098 1239 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 TERF1P54274 439 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PEX3P56589 373 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 INHBEP58166 350 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PSMC1P62191 440 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 CAP1Q01518 475 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 UBXN1Q04323 297 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 LRRC63Q05C16 580 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 SPAG1Q07617 926 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 ACVR2BQ13705 512 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 GTF2H3Q13889 308 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 GALEQ14376 348 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 GRM3Q14832 879 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 NR1I3Q14994 352 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PLCB4Q15147 1175 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 ZKSCAN8Q15776 578 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 KNOP1Q1ED39 458 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 BMT2Q1RMZ1 405 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CCDC40Q4G0X9 1142 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 FILIP1LQ4L180 1135 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 XKR3Q5GH77 459 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CWF19L1Q69YN2 538 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 IL31Q6EBC2 164 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CC2D1AQ6P1N0 951 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 PGM2L1Q6PCE3 622 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 KCNV1Q6PIU1 500 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 OTUD6AQ7L8S5 288 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 ZNF720Q7Z2F6 126 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 FAM114A1Q8IWE2 563 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 C17orf53Q8N3J3 647 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 TOP6BLQ8N6T0 577 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 EFHBQ8N7U6 833 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 RCBTB1Q8NDN9 531 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 OR6J1Q8NGC5 347 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 NOC3LQ8WTT2 800 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 CACTINQ8WUQ7 758 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 AFG1LQ8WV93 481 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 TRAPPC12Q8WVT3 735 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 SEPT1Q8WYJ6 367 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 USP6NLQ92738 828 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 EZH1Q92800 747 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 DIO2Q92813 273 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 GLG1Q92896 1179 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 TMEM143Q96AN5 459 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 ZBTB10Q96DT7 871 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CLIP3Q96DZ5 547 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 COX4I2Q96KJ9 171 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CTAGE1Q96RT6 745 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PAIP2Q9BPZ3 127 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 TUBGCP2Q9BSJ2 902 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 HDAC8Q9BY41 377 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 POLR3FQ9H1D9 316 aaPredicted RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 ABHD16BQ9H3Z7 469 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 AZI2Q9H6S1 392 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 ATP6V0A4Q9HBG4 840 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 IFT122Q9HBG6 1241 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 OLFML3Q9NRN5 406 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 KCND2Q9NZV8 630 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 CLEC1BQ9P126 229 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PUF60Q9UHX1 559 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 TAGLN3Q9UI15 199 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PYCARDQ9ULZ3 195 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 GABRQQ9UN88 632 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA9Q9Y5G4 932 aaKnown RBP4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA8Q9Y5G5 932 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA7Q9Y5G6 932 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA6Q9Y5G7 932 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA3Q9Y5H0 932 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 PCDHGA2Q9Y5H1 932 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 TSC2P49815 1807 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 DENND4CQ5VZ89 1909 aa4.5□□□□□ -1.69
CD44-226ENST00000527889 EMSYQ7Z589 1322 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 PDXKO00764 312 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 CETN3O15182 167 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 TGFB1I1O43294 461 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 CALUO43852 315 aaPredicted RBP4.49□□□□□ -1.69
CD44-226ENST00000527889 KIF20AO95235 890 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 FGFR1OPO95684 399 aaKnown RBP4.49□□□□□ -1.69
CD44-226ENST00000527889 NR3C1P04150 777 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 LGALS2P05162 132 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 ASGR2P07307 311 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 EN2P19622 333 aaPredicted RBP4.49□□□□□ -1.69
CD44-226ENST00000527889 NR2F2P24468 414 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 ATICP31939 592 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 PBX1P40424 430 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 RGS2P41220 211 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 NPTX2P47972 431 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 KLK7P49862 253 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 SEPHS1P49903 392 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 DNM2P50570 870 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 CYP2J2P51589 502 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 NEK3P51956 506 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 NCKAP1LP55160 1127 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 ADKP55263 362 aaKnown RBP4.49□□□□□ -1.69
CD44-226ENST00000527889 FKBP3Q00688 224 aaKnown RBP4.49□□□□□ -1.69
CD44-226ENST00000527889 POU5F1BQ06416 359 aa4.49□□□□□ -1.69
CD44-226ENST00000527889 TBX2Q13207 712 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms