RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 SPATA21Q7Z572 469 aa16.03■□□□□ 0.16
USH1C-207ENST00000527720 PLEKHH3Q7Z736 793 aa16.03■□□□□ 0.16
USH1C-207ENST00000527720 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.03■□□□□ 0.16
USH1C-207ENST00000527720 MRPL45Q9BRJ2 306 aaKnown RBP16.03■□□□□ 0.16
USH1C-207ENST00000527720 FRMD8Q9BZ67 464 aaPredicted RBP16.03■□□□□ 0.16
USH1C-207ENST00000527720 CNTN3Q9P232 1028 aa16.03■□□□□ 0.16
USH1C-207ENST00000527720 XPO7Q9UIA9 1087 aaKnown RBP16.03■□□□□ 0.16
USH1C-207ENST00000527720 ARL2BPQ9Y2Y0 163 aa16.03■□□□□ 0.16
USH1C-207ENST00000527720 SMIM35A0A1B0GVV1 85 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 GOLGA8MH3BSY2 632 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 MDM4O15151 490 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 SDC4P31431 198 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 SCNN1AP37088 669 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 KRT81Q14533 505 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 MTFR1Q15390 333 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 PKN2Q16513 984 aaKnown RBP16.02■□□□□ 0.16
USH1C-207ENST00000527720 HP1BP3Q5SSJ5 553 aaPredicted RBP16.02■□□□□ 0.16
USH1C-207ENST00000527720 SH3PXD2AQ5TCZ1 1133 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 PMF1Q6P1K2 205 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 ADGRD1Q6QNK2 874 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 ALKAL1Q6UXT8 129 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 ARCQ7LC44 396 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 TTC30AQ86WT1 665 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 ANKMY2Q8IV38 441 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 RTP4Q96DX8 246 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 PIWIL1Q96J94 861 aaKnown RBP16.02■□□□□ 0.16
USH1C-207ENST00000527720 ZMAT2Q96NC0 199 aaKnown RBP16.02■□□□□ 0.16
USH1C-207ENST00000527720 PARK7Q99497 189 aaKnown RBP16.02■□□□□ 0.16
USH1C-207ENST00000527720 DHRS4Q9BTZ2 278 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 C10orf88Q9H8K7 445 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 MLXIPLQ9NP71 852 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 CYLDQ9NQC7 956 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 SETD4Q9NVD3 440 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 SLC5A4Q9NY91 659 aa16.02■□□□□ 0.16
USH1C-207ENST00000527720 CHADO15335 359 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 TMEM63AO94886 807 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 TAC1P20366 129 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 WDR4P57081 412 aaKnown RBP16.02■□□□□ 0.15
USH1C-207ENST00000527720 FKBP1BP68106 108 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 MMRN1Q13201 1228 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 SPARCL1Q14515 664 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 MSS51Q4VC12 460 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 ACOT1Q86TX2 421 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 FBXO36Q8NEA4 188 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 UPF1Q92900 1129 aaKnown RBP eCLIP16.02■□□□□ 0.15
USH1C-207ENST00000527720 DNAI2Q9GZS0 605 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 SLC40A1Q9NP59 571 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 PRKAG3Q9UGI9 489 aa16.02■□□□□ 0.15
USH1C-207ENST00000527720 UBQLN1Q9UMX0 589 aaKnown RBP16.02■□□□□ 0.15
USH1C-207ENST00000527720 MBLAC1A4D2B0 266 aaPredicted RBP16.01■□□□□ 0.15
USH1C-207ENST00000527720 SLC15A5A6NIM6 579 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 A6NJR5 290 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 SPAG6O75602 509 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 ECM2O94769 699 aaPredicted RBP16.01■□□□□ 0.15
USH1C-207ENST00000527720 RGS7P49802 495 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 BASP1P80723 227 aaKnown RBP16.01■□□□□ 0.15
USH1C-207ENST00000527720 C3orf62Q6ZUJ4 267 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 PALM2Q8IXS6 379 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 FAM172AQ8WUF8 416 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 ZNF670Q9BS34 389 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 PAK5Q9P286 719 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 F2P00734 622 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 CD4P01730 458 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 DARSP14868 501 aaKnown RBP16.01■□□□□ 0.15
USH1C-207ENST00000527720 PTPN9P43378 593 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 GAD2Q05329 585 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 KCNJ11Q14654 390 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 CDO1Q16878 200 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 C9orf57Q5W0N0 161 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 SLC9A4Q6AI14 798 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 C4orf22Q6V702 233 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 CAPN12Q6ZSI9 719 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 PLD5Q8N7P1 536 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 KHSRPQ92945 711 aaKnown RBP eCLIP16.01■□□□□ 0.15
USH1C-207ENST00000527720 EIF2AQ9BY44 585 aaKnown RBP16.01■□□□□ 0.15
USH1C-207ENST00000527720 KLC4Q9NSK0 619 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 HAUS2Q9NVX0 235 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 TUBGCP4Q9UGJ1 667 aa16.01■□□□□ 0.15
USH1C-207ENST00000527720 TRIP12Q14669 1992 aaPredicted RBP16■□□□□ 0.15
USH1C-207ENST00000527720 TCRBV7S3A2A0A539 114 aa16■□□□□ 0.15
USH1C-207ENST00000527720 H7C0C1 242 aa16■□□□□ 0.15
USH1C-207ENST00000527720 PIK3R2O00459 728 aa16■□□□□ 0.15
USH1C-207ENST00000527720 APOL1O14791 398 aa16■□□□□ 0.15
USH1C-207ENST00000527720 XPOTO43592 962 aaKnown RBP16■□□□□ 0.15
USH1C-207ENST00000527720 TYROBPO43914 113 aa16■□□□□ 0.15
USH1C-207ENST00000527720 BANF1O75531 89 aa16■□□□□ 0.15
USH1C-207ENST00000527720 GRAP2O75791 330 aa16■□□□□ 0.15
USH1C-207ENST00000527720 TOMM70O94826 608 aa16■□□□□ 0.15
USH1C-207ENST00000527720 SMIM10L2AP0DMW4 78 aa16■□□□□ 0.15
USH1C-207ENST00000527720 SMIM10L2BP0DMW5 78 aa16■□□□□ 0.15
USH1C-207ENST00000527720 IL4RP24394 825 aa16■□□□□ 0.15
USH1C-207ENST00000527720 SSTR1P30872 391 aa16■□□□□ 0.15
USH1C-207ENST00000527720 ATP5OP48047 213 aa16■□□□□ 0.15
USH1C-207ENST00000527720 RPL34P49207 117 aaKnown RBP16■□□□□ 0.15
USH1C-207ENST00000527720 NPNTQ6UXI9 565 aa16■□□□□ 0.15
USH1C-207ENST00000527720 FAF2Q96CS3 445 aa16■□□□□ 0.15
USH1C-207ENST00000527720 PCDH18Q9HCL0 1135 aa16■□□□□ 0.15
USH1C-207ENST00000527720 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16■□□□□ 0.15
USH1C-207ENST00000527720 BCLAF3A2AJT9 711 aaKnown RBP15.99■□□□□ 0.15
USH1C-207ENST00000527720 PPEF2O14830 753 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms