RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	WIPF3	A6NGB9	483 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	LINC01548	A6NM66	108 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	THAP12	O43422	761 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	CAND2	O75155	1236 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	A1BG	P04217	495 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	PARP1	P09874	1014 aa	Known RBP	5.64	□□□□□ -1.51
CD44-223	ENST00000526553	GK	P32189	559 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	PGD	P52209	483 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	ITGA8	P53708	1063 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	TIRAP	P58753	221 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	SUMO2	P61956	95 aa	Known RBP	5.64	□□□□□ -1.51
CD44-223	ENST00000526553	CYP4F2	P78329	520 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	CCDC181	Q5TID7	509 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	DPY19L3	Q6ZPD9	716 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	RNF44	Q7L0R7	432 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	C11orf96	Q7Z7L8	435 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	SIRT6	Q8N6T7	355 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	LENG8	Q96PV6	779 aa	Predicted RBP	5.64	□□□□□ -1.51
CD44-223	ENST00000526553	COLEC11	Q9BWP8	271 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	ZCWPW1	Q9H0M4	648 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	SH3BP4	Q9P0V3	963 aa		5.64	□□□□□ -1.51
CD44-223	ENST00000526553	PCSK5	Q92824	1860 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	ANO9	A1A5B4	782 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	CLCA1	A8K7I4	914 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553		H7C1Q1	480 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	APAF1	O14727	1248 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	PMM2	O15305	246 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	PMPCB	O75439	489 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	PRKCG	P05129	697 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	MYCL	P12524	364 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-223	ENST00000526553	HGF	P14210	728 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	TSHR	P16473	764 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	MRPS21	P82921	87 aa	Known RBP	5.63	□□□□□ -1.51
CD44-223	ENST00000526553	HOXA4	Q00056	320 aa	Predicted RBP	5.63	□□□□□ -1.51
CD44-223	ENST00000526553	IFIT5	Q13325	482 aa	Known RBP	5.63	□□□□□ -1.51
CD44-223	ENST00000526553	COLEC12	Q5KU26	742 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	NAPRT	Q6XQN6	538 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	TRIM72	Q6ZMU5	477 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	SEMA6D	Q8NFY4	1073 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	ZDHHC12	Q96GR4	267 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	AMFR	Q9UKV5	643 aa		5.63	□□□□□ -1.51
CD44-223	ENST00000526553	POM121B	A6NF01	834 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	MANSC4	A6NHS7	340 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	AP4M1	O00189	453 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	KPNA5	O15131	536 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	PRC1	O43663	620 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	PRIM2	P49643	509 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	GATM	P50440	423 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	TFF2	Q03403	129 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	SLC10A2	Q12908	348 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	STK3	Q13188	491 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	PROSER3	Q2NL68	480 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	L1TD1	Q5T7N2	865 aa	Known RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	KIRREL2	Q6UWL6	708 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	KRT28	Q7Z3Y7	464 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	SFTPA1	Q8IWL2	248 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	RNF152	Q8N8N0	203 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	ATP11C	Q8NB49	1132 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	VOPP1	Q96AW1	172 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	CTHRC1	Q96CG8	243 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	DAZAP1	Q96EP5	407 aa	Known RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	ZBTB45	Q96K62	511 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	SNX18	Q96RF0	628 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	SELENOO	Q9BVL4	669 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	HEYL	Q9NQ87	328 aa	Predicted RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	ADARB2	Q9NS39	739 aa	Known RBP	5.62	□□□□□ -1.51
CD44-223	ENST00000526553	DNAJB11	Q9UBS4	358 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	VPS51	Q9UID3	782 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	RIMKLB	Q9ULI2	386 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553	FRMD4B	Q9Y2L6	1034 aa		5.62	□□□□□ -1.51
CD44-223	ENST00000526553		A0A1W2PPC4	97 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	AREL1	O15033	823 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	PDE8B	O95263	885 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	FGA	P02671	866 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	CD19	P15391	556 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	ZNF37A	P17032	561 aa	Predicted RBP	5.61	□□□□□ -1.51
CD44-223	ENST00000526553	TBX4	P57082	545 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	KCNAB1	Q14722	419 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	MANEAL	Q5VSG8	457 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	DENND2C	Q68D51	928 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	CCSAP	Q6IQ19	270 aa	Predicted RBP	5.61	□□□□□ -1.51
CD44-223	ENST00000526553	PTCHD4	Q6ZW05	846 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	NOL8	Q76FK4	1167 aa	Known RBP	5.61	□□□□□ -1.51
CD44-223	ENST00000526553	VGLL2	Q8N8G2	317 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	TERB1	Q8NA31	727 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	CYP2W1	Q8TAV3	490 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	DPF1	Q92782	380 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	FAM227B	Q96M60	508 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	MACROD1	Q9BQ69	325 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	NAA15	Q9BXJ9	866 aa	Known RBP	5.61	□□□□□ -1.51
CD44-223	ENST00000526553	STARD7	Q9NQZ5	370 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553	TBC1D23	Q9NUY8	699 aa		5.61	□□□□□ -1.51
CD44-223	ENST00000526553		A8MVJ9	347 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	AGPS	O00116	658 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	EXOC5	O00471	708 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	CES2	O00748	559 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	SPRY2	O43597	315 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	KRT18	P05783	430 aa	Known RBP	5.6	□□□□□ -1.51
CD44-223	ENST00000526553	MYL1	P05976	194 aa		5.6	□□□□□ -1.51
CD44-223	ENST00000526553	FGFR2	P21802	821 aa		5.6	□□□□□ -1.51

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