RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MYH10P35580 1976 aa15.21■□□□□ 0.03
CPSF1-201ENST00000526271 PLXNB3Q9ULL4 1909 aa15.21■□□□□ 0.02
CPSF1-201ENST00000526271 SMG1Q96Q15 3661 aaKnown RBP15.2■□□□□ 0.02
CPSF1-201ENST00000526271 ZNF233A6NK53 670 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 KHNYNO15037 678 aaKnown RBP15.2■□□□□ 0.02
CPSF1-201ENST00000526271 CLIC2O15247 247 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 COCHO43405 550 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 PFKLP17858 780 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 PTPN1P18031 435 aaKnown RBP15.2■□□□□ 0.02
CPSF1-201ENST00000526271 GNL1P36915 607 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-201ENST00000526271 STAT6P42226 847 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 CASP4P49662 377 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 CDH8P55286 799 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 NR1H3Q13133 447 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 ALCAMQ13740 583 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 DUOXA2Q1HG44 320 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 PIP4P1Q86T03 277 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 FSIP1Q8NA03 581 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 RDH13Q8NBN7 331 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 ZNF507Q8TCN5 953 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 SCFD1Q8WVM8 642 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 CEP295NLQ96MC4 621 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 PNKPQ96T60 521 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 SCNM1Q9BWG6 230 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 ADAM33Q9BZ11 813 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 AGPAT3Q9NRZ7 376 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 EVLQ9UI08 416 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-201ENST00000526271 LOC400499M0QZD8 3231 aa15.2■□□□□ 0.02
CPSF1-201ENST00000526271 KNL1Q8NG31 2342 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 BEST1O76090 585 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CAPNS1P04632 268 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 ZDHHC11BP0C7U3 371 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CEACAM1P13688 526 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 ITPKAP23677 461 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 MYL6P60660 151 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CYP24A1Q07973 514 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 MYO1EQ12965 1108 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 PSMD6Q15008 389 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 SNRNP35Q16560 246 aaKnown RBP15.19■□□□□ 0.02
CPSF1-201ENST00000526271 TRIM61Q5EBN2 209 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 KIAA1211LQ6NV74 962 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CCDC73Q6ZRK6 1079 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 TTC30AQ86WT1 665 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 BBS7Q8IWZ6 715 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 KIAA1958Q8N8K9 716 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 OR2I1PQ8NGU4 316 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 ACOX2Q99424 681 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CGRRF1Q99675 332 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 SMYD3Q9H7B4 428 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 CCSER2Q9H7U1 834 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 PILRBQ9UKJ0 227 aa15.19■□□□□ 0.02
CPSF1-201ENST00000526271 A0A1W2PQF6 199 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 FAM92AA1XBS5 289 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 TRIM66O15016 1216 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 TNNC2P02585 160 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 DLATP10515 647 aaKnown RBP15.18■□□□□ 0.02
CPSF1-201ENST00000526271 ADH5P11766 374 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 ENGP17813 658 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 GABRG2P18507 467 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 EIF2DP41214 584 aaKnown RBP15.18■□□□□ 0.02
CPSF1-201ENST00000526271 NASPP49321 788 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-201ENST00000526271 IFRD2Q12894 506 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-201ENST00000526271 UAP1L1Q3KQV9 507 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 SHC4Q6S5L8 630 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 TMEM25Q86YD3 366 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 SLC41A1Q8IVJ1 513 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 DEFB119Q8N690 84 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 NAT16Q8N8M0 369 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 B3GALNT2Q8NCR0 500 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 OR6B3Q8NGW1 331 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 SNX21Q969T3 373 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 CCDC127Q96BQ5 260 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 MMS19Q96T76 1030 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 ARHGEF4Q9NR80 690 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 HMGXB4Q9UGU5 601 aa15.18■□□□□ 0.02
CPSF1-201ENST00000526271 CHORDC1Q9UHD1 332 aaPredicted RBP15.18■□□□□ 0.02
CPSF1-201ENST00000526271 SPAARA0A1B0GVQ0 90 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 TCRBV21S2A2A0A5A6 115 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 TAF4O00268 1085 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 KIAA0391O15091 583 aaKnown RBP15.17■□□□□ 0.02
CPSF1-201ENST00000526271 HYAL3O43820 417 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-201ENST00000526271 TULP3O75386 442 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 VNN1O95497 513 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 ABL1P00519 1130 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 MBL2P11226 248 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-201ENST00000526271 ANXA13P27216 316 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 SEMA3BQ13214 749 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 MAPRE1Q15691 268 aaKnown RBP15.17■□□□□ 0.02
CPSF1-201ENST00000526271 WDR72Q3MJ13 1102 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 SNX30Q5VWJ9 437 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 DAB2IPQ5VWQ8 1189 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 CNNM4Q6P4Q7 775 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 HS2ST1Q7LGA3 356 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 NELFCDQ8IXH7 590 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 FUKQ8N0W3 1084 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 LINC00301Q8NCQ3 95 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 HMGB4Q8WW32 186 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 ERLEC1Q96DZ1 483 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 CAPN10Q9HC96 672 aa15.17■□□□□ 0.02
CPSF1-201ENST00000526271 OSER1Q9NX31 292 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms