RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 C8orf58Q8NAV2 365 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 RPL36ALQ969Q0 106 aaKnown RBP2.88□□□□□ -1.95
CD44-216ENST00000525293 SPSB4Q96A44 273 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 RSPRY1Q96DX4 576 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 NAF1Q96HR8 494 aaKnown RBP2.88□□□□□ -1.95
CD44-216ENST00000525293 SUCLG2Q96I99 432 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 SNX18Q96RF0 628 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 PPP1R9BQ96SB3 815 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 XPNPEP3Q9NQH7 507 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 PDGFCQ9NRA1 345 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 C1orf112Q9NSG2 853 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 TFCP2L1Q9NZI6 479 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 LPAR3Q9UBY5 353 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 AMFRQ9UKV5 643 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 PNMA2Q9UL42 364 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 TPCN1Q9ULQ1 816 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 DRG1Q9Y295 367 aaKnown RBP2.88□□□□□ -1.95
CD44-216ENST00000525293 BTBD3Q9Y2F9 522 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 EID1Q9Y6B2 187 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 CDY1Q9Y6F8 540 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 WDR17Q8IZU2 1322 aa2.88□□□□□ -1.95
CD44-216ENST00000525293 SMIM35A0A1B0GVV1 85 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 TRIM43BA6NCK2 446 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 KCNU1A8MYU2 1149 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 UBE2Q2LH0YL09 131 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 H7C4K7 107 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CCER2I3L3R5 266 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CLGNO14967 610 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 SRGAP2O75044 1071 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 PMPCBO75439 489 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 FGAP02671 866 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CYP2A6P11509 494 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 MYCLP12524 364 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 SFPQP23246 707 aaKnown RBP eCLIP2.87□□□□□ -1.95
CD44-216ENST00000525293 PAX3P23760 479 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 UQCRC1P31930 480 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 ARHGAP25P42331 645 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 MMP14P50281 582 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 RENBPP51606 427 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 ITGA8P53708 1063 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 BCAT1P54687 386 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 SUMO2P61956 95 aaKnown RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 PSG6Q00889 435 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CNGA2Q16280 664 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 INSCQ1MX18 579 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CCDC96Q2M329 555 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 CERKLQ49MI3 558 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 C3orf38Q5JPI3 329 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 MORN5Q5VZ52 161 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 MAGEB6Q8N7X4 407 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 DENND1AQ8TEH3 1009 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 JDP2Q8WYK2 163 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 ZNF622Q969S3 477 aaKnown RBP eCLIP2.87□□□□□ -1.95
CD44-216ENST00000525293 TRIM43Q96BQ3 446 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 ZBTB45Q96K62 511 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 CCDC17Q96LX7 622 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 ZNF830Q96NB3 372 aaPredicted RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 MMS19Q96T76 1030 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 STK31Q9BXU1 1019 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 FAM204AQ9H8W3 233 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 DNMT3BQ9UBC3 853 aaKnown RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 DDX20Q9UHI6 824 aaKnown RBP2.87□□□□□ -1.95
CD44-216ENST00000525293 HDAC9Q9UKV0 1011 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 USP22Q9UPT9 525 aa2.87□□□□□ -1.95
CD44-216ENST00000525293 LOC102723971A0A1B0GUV8 181 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 TCRBV5S1A1TA0A578 114 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 MBD3L4A6NDZ8 208 aaPredicted RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 MBD3L3A6NE82 208 aaPredicted RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 ISM1B1AKI9 464 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 GCATO75600 419 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 CHRM5P08912 532 aaPredicted RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 EPHA3P29320 983 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 PTDSS1P48651 473 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 MTHFSP49914 203 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 COPB1P53618 953 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 RHBDL3P58872 404 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 FMO1Q01740 532 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 MYBPC2Q14324 1141 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 DAZAP2Q15038 168 aaPredicted RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 FAM187BQ17R55 369 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 CCDC184Q52MB2 194 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 RNF220Q5VTB9 566 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 NXNQ6DKJ4 435 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 KRBA2Q6ZNG9 492 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 BCDIN3DQ7Z5W3 292 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 RAB11FIP4Q86YS3 637 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 SFTPA1Q8IWL2 248 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 TCEAL8Q8IYN2 117 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 GALNT16Q8N428 558 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 FAM156AQ8NDB6 213 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 ADAMTS18Q8TE60 1221 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 CTHRC1Q96CG8 243 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 NMD3Q96D46 503 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 TRIM5Q9C035 493 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 PRSS22Q9GZN4 317 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 SPRTNQ9H040 489 aaPredicted RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 ASIC5Q9NY37 505 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 KLHL13Q9P2N7 655 aa2.86□□□□□ -1.95
CD44-216ENST00000525293 AFF4Q9UHB7 1163 aaKnown RBP2.86□□□□□ -1.95
CD44-216ENST00000525293 TCEAL9Q9UHQ7 104 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms