RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SNCBQ16143 134 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 CYP1B1Q16678 543 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 TRPM8Q7Z2W7 1104 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 UNC45BQ8IWX7 931 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ABI1Q8IZP0 508 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 MAML1Q92585 1016 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SGSM3Q96HU1 749 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 MAML3Q96JK9 1138 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 MAF1Q9H063 256 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.58□□□□□ -0.72
MCF2-209ENST00000520602 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.58□□□□□ -0.72
MCF2-209ENST00000520602 SHOC2Q9UQ13 582 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 NRCAMQ92823 1304 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ZC3H4Q9UPT8 1303 aaKnown RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 KRT38O76015 456 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 KITP10721 976 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ZFXP17010 805 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 YY1P25490 414 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 RBL1P28749 1068 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 THPOP40225 353 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 RGS2P41220 211 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 CDKN2BP42772 138 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 POU5F1Q01860 360 aaKnown RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 ACTN3Q08043 901 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 CACNB2Q08289 660 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 ADIGQ0VDE8 80 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 FASTKD3Q14CZ7 662 aaKnown RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 EFHC1Q5JVL4 640 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SPDYCQ5MJ68 293 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 CXCL17Q6UXB2 119 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 GLIS1Q8NBF1 620 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 PGBD4Q96DM1 585 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 HERPUD2Q9BSE4 406 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ZFYVE28Q9HCC9 887 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SENP1Q9P0U3 644 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ARL2BPQ9Y2Y0 163 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 MRPL42Q9Y6G3 142 aaKnown RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 APOC4-APOC2K7ER74 178 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 TRUB2O95900 331 aaKnown RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 APOC2P02655 101 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 FAM200BP0CF97 657 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 YBX3P16989 372 aaKnown RBP eCLIP10.57□□□□□ -0.72
MCF2-209ENST00000520602 AMPD1P23109 780 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 CYP2F1P24903 491 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PNPLA4P41247 253 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 NRLP54845 237 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 ENPEPQ07075 957 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 BST2Q10589 180 aaKnown RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 MDH1BQ5I0G3 518 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 ERMARDQ5T6L9 678 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 LRRC37BQ96QE4 947 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 GAD1Q99259 594 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PAFAH2Q99487 392 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 LHX5Q9H2C1 402 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 SIX4Q9UIU6 781 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 SMG5Q9UPR3 1016 aaKnown RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 TREHO43280 583 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 ATP9BO43861 1147 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 AP1G2O75843 785 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 ACADSBP45954 432 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 TPI1P60174 286 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 RCN2Q14257 317 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PDK2Q15119 407 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 CDCA2Q69YH5 1023 aaPredicted RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 BBS12Q6ZW61 710 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 KIF2BQ8N4N8 673 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 C12orf50Q8NA57 414 aaPredicted RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 RNF139Q8WU17 664 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 SMYD2Q9NRG4 433 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PCDHGC3Q9UN70 934 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 GRIN2DO15399 1336 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 E2F8A0AVK6 867 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 H0YGN5 161 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PGK1P00558 417 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 GRM5P41594 1212 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 OVGP1Q12889 678 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 DPYSL3Q14195 570 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 FSCN1Q16658 493 aaKnown RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 C6orf163Q5TEZ5 329 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 PMF1Q6P1K2 205 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 DENND5BQ6ZUT9 1274 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 KDELC2Q7Z4H8 507 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 DEFB106AQ8N104 65 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 SDCBP2Q9H190 292 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 KIF9Q9HAQ2 790 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 ETNK1Q9HBU6 452 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 NPHS2Q9NP85 383 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 DDIT4Q9NX09 232 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 DRG1Q9Y295 367 aaKnown RBP10.57□□□□□ -0.72
MCF2-209ENST00000520602 NFS1Q9Y697 457 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 LRRC37AA6NMS7 1700 aa10.57□□□□□ -0.72
MCF2-209ENST00000520602 EEF2KO00418 725 aaKnown RBP10.56□□□□□ -0.72
MCF2-209ENST00000520602 CNMDO75829 334 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 IL1R2P27930 398 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 RASSF2P50749 326 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 MROH9Q5TGP6 573 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 RAPH1Q70E73 1250 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 USP33Q8TEY7 942 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 NDRG1Q92597 394 aaKnown RBP10.56□□□□□ -0.72
MCF2-209ENST00000520602 VPS11Q9H270 941 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms