RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 SERPINH1P50454 418 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 PTPAQ15257 358 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 SYTL3Q4VX76 610 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 XKR3Q5GH77 459 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CYP4A22Q5TCH4 519 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 PARK7Q99497 189 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 FAM49BQ9NUQ9 324 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TUBGCP4Q9UGJ1 667 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 MYRFQ9Y2G1 1151 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TMA7Q9Y2S6 64 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 DIP2BQ9P265 1576 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CPS1P31327 1500 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 MROH7Q68CQ1 1323 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 F8W810 466 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 PHGDHO43175 533 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TIMM44O43615 452 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CHRM3P20309 590 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 AKT1P31749 480 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 FDFT1P37268 417 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 ZNF543Q08ER8 600 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 MTMR2Q13614 643 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 NEDD8Q15843 81 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CDH24Q86UP0 819 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CCNJLQ8IV13 435 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 WDR60Q8WVS4 1066 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CCDC126Q96EE4 140 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TEX13BQ9BXU2 312 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 EHD4Q9H223 541 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CACNA2D2Q9NY47 1150 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 ARHGAP20Q9P2F6 1191 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 SLCO1B7G3V0H7 640 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CLOCKO15516 846 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CBX6O95503 412 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 FASP25445 335 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 GMPSP49915 693 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RPL10AP62906 217 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TCHHL1Q5QJ38 904 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 ANGEL2Q5VTE6 544 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 FOPNLQ96NB1 174 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 NIF3L1Q9GZT8 377 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 GGA3Q9NZ52 723 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 NYAP2Q9P242 653 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 ITGB1BP2Q9UKP3 347 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RIPK2O43353 540 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RAG1P15918 1043 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 ATP4AP20648 1035 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RPA1P27694 616 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RGS2P41220 211 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 GLRBP48167 497 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 PRIM2P49643 509 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 TRAF2Q12933 501 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 NCF4Q15080 339 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 INAQ16352 499 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 CENPLQ8N0S6 344 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 AGBL3Q8NEM8 1001 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 RAET1EQ8TD07 263 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 SMAD5Q99717 465 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 STK39Q9UEW8 545 aa13.73□□□□□ -0.21
TCOF1-214ENST00000515035 EIF3LQ9Y262 564 aaKnown RBP13.73□□□□□ -0.21
TCOF1-214ENST00000515035 HEATR9A2RTY3 570 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 AVPR1AP37288 418 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 IL12RB1P42701 662 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.211e-6■■■■□ 22.4
TCOF1-214ENST00000515035 STAT5BP51692 787 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 SLC16A1P53985 500 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 IL5RAQ01344 420 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 OTOAQ7RTW8 1153 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 HDAC7Q8WUI4 952 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 TFB1MQ8WVM0 346 aaKnown RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 MAGED4Q96JG8 741 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 ZNF333Q96JL9 665 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 SPATA33Q96N06 139 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 NT5C1AQ9BXI3 368 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 FRMD8P1Q9BZ68 369 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 OSGEPQ9NPF4 335 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 NR5A2O00482 541 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 CPA3P15088 417 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 PTENP60484 403 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 TMC3Q7Z5M5 1100 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 ADCK2Q7Z695 626 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 RAB42Q8N4Z0 105 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 C19orf60Q96EN9 201 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 MCRS1Q96EZ8 462 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 REXO4Q9GZR2 422 aaKnown RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 PNMA8BQ9ULN7 279 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 RUVBL2Q9Y230 463 aaKnown RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 SNTNA6NMZ2 147 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 CFAP99D6REC4 459 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 TRAPPC3O43617 180 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 PDGFRBP09619 1106 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 TMEM132DQ14C87 1099 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 CACHD1Q5VU97 1274 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 CDC42EP5Q6NZY7 148 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 AENQ8WTP8 325 aaKnown RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 C6orf62Q9GZU0 229 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-214ENST00000515035 VTA1Q9NP79 307 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 HPSEQ9Y251 543 aa13.72□□□□□ -0.21
TCOF1-214ENST00000515035 KIDINS220Q9ULH0 1771 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms