RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ESRRBO95718 433 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MIPP30301 263 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 PTPN7P35236 360 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 TWF1Q12792 350 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 RRP1BQ14684 758 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 C16orf89Q6UX73 402 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SCUBE1Q8IWY4 988 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 CATSPER1Q8NEC5 780 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SPATA17Q96L03 361 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ADNPQ9H2P0 1102 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MOSPD1Q9UJG1 213 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MRPL42Q9Y6G3 142 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 ADGRA2Q96PE1 1338 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 H3BRB1 525 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 XPO1O14980 1071 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 PSMD3O43242 534 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ATP9AO75110 1047 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 RALBP11234 206 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 OR1G1P47890 313 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 DYNC1I2Q13409 638 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 AUHQ13825 339 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 MGAT5BQ3V5L5 792 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 GRAMD4Q6IC98 578 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 STRA8Q7Z7C7 330 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 PCYOX1LQ8NBM8 494 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 KAT2BQ92831 832 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 BHMTQ93088 406 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SPATC1LQ9H0A9 340 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 TUT1Q9H6E5 874 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 SLC30A1Q9Y6M5 507 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 RIMBP3CA6NJZ7 1639 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 RIMBP3BA6NNM3 1639 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 RIMBP3Q9UFD9 1639 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 KIF1CO43896 1103 aaKnown RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 FGRP09769 529 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 CYP2F1P24903 491 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 PLIN5Q00G26 463 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 INPP5AQ14642 412 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 CES3Q6UWW8 571 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 IQCKQ8N0W5 287 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 THAP11Q96EK4 314 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 WNK4Q96J92 1243 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 VCPIP1Q96JH7 1222 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 ZBED2Q9BTP6 218 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 IARS2Q9NSE4 1012 aaKnown RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 SLC38A7Q9NVC3 462 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 SALL4Q9UJQ4 1053 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 TIMM13Q9Y5L4 95 aaPredicted RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 RRN3P2A6NIE6 340 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 TFE3P19532 575 aaPredicted RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 ACAT1P24752 427 aaKnown RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 DSG3P32926 999 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 GLB1LQ6UWU2 654 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 ZNF662Q6ZS27 426 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 BRSK2Q8IWQ3 736 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 POU5F2Q8N7G0 328 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 NAF1Q96HR8 494 aaKnown RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 NAT9Q9BTE0 207 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 FRMD8P1Q9BZ68 369 aaPredicted RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 SUPT3HB4E1H0 165 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 PPP1R11O60927 126 aaPredicted RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 ZNF286BP0CG31 522 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 PTPN4P29074 926 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 SERPINB3P29508 390 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 PNPLA4P41247 253 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 BCAT1P54687 386 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 FAAP100Q0VG06 881 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 ITGA9Q13797 1035 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 SGO1Q5FBB7 561 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 LLGL2Q6P1M3 1020 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 COLGALT1Q8NBJ5 622 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 GANCQ8TET4 914 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 SHC3Q92529 594 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 PRCCQ92733 491 aaPredicted RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 TRIM54Q9BYV2 358 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 CATSPERBQ9H7T0 1116 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 LRRC40Q9H9A6 602 aa13.11□□□□□ -0.31
USP53-209ENST00000514665 ZC3H4Q9UPT8 1303 aaKnown RBP13.11□□□□□ -0.31
USP53-209ENST00000514665 CYP3A7-CYP3A51PA0A087WV96 503 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 FCHO1O14526 889 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CYB561D2O14569 222 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CPA3P15088 417 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CALB2P22676 271 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CYP3A7P24462 503 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 FLT3P36888 993 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ALDH5A1P51649 535 aaPredicted RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 FAM83EQ2M2I3 478 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ZNF484Q5JVG2 852 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 THEMIS2Q5TEJ8 643 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ZCCHC23Q6ZST2 131 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 FAM71AQ8IYT1 594 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 CALML6Q8TD86 181 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 BLOC1S5Q8TDH9 187 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 TEKT4Q8WW24 435 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ATXN2LQ8WWM7 1075 aaKnown RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 CYGBQ8WWM9 190 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 ASPSCR1Q9BZE9 553 aa13.1□□□□□ -0.31
USP53-209ENST00000514665 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.1□□□□□ -0.31
USP53-209ENST00000514665 SLC13A4Q9UKG4 626 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms