RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.92■□□□□ 0.14
SCLT1-209ENST00000511426 CCDC50Q8IVM0 306 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 MAP7D3Q8IWC1 876 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 IFT20Q8IY31 132 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 GPR65Q8IYL9 337 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 ZMIZ2Q8NF64 920 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 SLCO2A1Q92959 643 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 TRIM43Q96BQ3 446 aaPredicted RBP15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PIWIL1Q96J94 861 aaKnown RBP15.92■□□□□ 0.14
SCLT1-209ENST00000511426 SLITRK1Q96PX8 696 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 SLC2A13Q96QE2 648 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 LRRC1Q9BTT6 524 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 AP1M1Q9BXS5 423 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 POPDC2Q9HBU9 364 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 IL23AQ9NPF7 189 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PRDM5Q9NQX1 630 aaPredicted RBP15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PCYOX1Q9UHG3 505 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 BEST1O76090 585 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 EFEMP2O95967 443 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 MIPP30301 263 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 AIF1P55008 147 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PDK2Q15119 407 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 TAZQ16635 292 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 CTXN3Q4LDR2 81 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 FBXO38Q6PIJ6 1188 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 ARFGAP1Q8N6T3 406 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 SPPL2BQ8TCT7 592 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 NT5C3BQ969T7 300 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 RAB17Q9H0T7 212 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PRDM16Q9HAZ2 1276 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 RC3H2Q9HBD1 1191 aaKnown RBP15.92■□□□□ 0.14
SCLT1-209ENST00000511426 ARFGAP3Q9NP61 516 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 PRKAG2Q9UGJ0 569 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 RASAL2Q9UJF2 1139 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 USP3Q9Y6I4 520 aa15.92■□□□□ 0.14
SCLT1-209ENST00000511426 TET1Q8NFU7 2136 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 FNDC1Q4ZHG4 1894 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 F8W810 466 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 ATP8B1O43520 1251 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TBC1D4O60343 1298 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 ENDOD1O94919 500 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TRUB2O95900 331 aaKnown RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 ZBED1O96006 694 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 CSF2RAP15509 400 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 LAG3P18627 525 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 BDNFP23560 247 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 GBP1P32455 592 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 GATMP50440 423 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 WDR5P61964 334 aaKnown RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 CCNG2Q16589 344 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 ZFYVE27Q5T4F4 411 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TRNP1Q6NT89 227 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 DRICH1Q6PGQ1 229 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TMCO3Q6UWJ1 677 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 SPOCD1Q6ZMY3 1216 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 SYDE1Q6ZW31 735 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 RNF168Q8IYW5 571 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 PRELID2Q8N945 189 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TTC13Q8NBP0 860 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 GRK7Q8WTQ7 553 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 PGAP3Q96FM1 320 aaPredicted RBP15.91■□□□□ 0.14
SCLT1-209ENST00000511426 C8orf48Q96LL4 319 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 PNKPQ96T60 521 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 SLC9A7Q96T83 725 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 TTPALQ9BTX7 342 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 GPR62Q9BZJ7 368 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 CWH43Q9H720 699 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 PCDHB5Q9Y5E4 795 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 BACE2Q9Y5Z0 518 aa15.91■□□□□ 0.14
SCLT1-209ENST00000511426 PIK3R2O00459 728 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 RALAP11233 206 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 CDKN2BP42772 138 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 GPR17Q13304 367 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 CUL1Q13616 776 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 SIX1Q15475 284 aaPredicted RBP15.9■□□□□ 0.14
SCLT1-209ENST00000511426 USP41Q3LFD5 358 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 BNIPLQ7Z465 357 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 LRRTM3Q86VH5 581 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 KLHL7Q8IXQ5 586 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 FAM172AQ8WUF8 416 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 FAM149B1Q96BN6 582 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 CFAP57Q96MR6 1250 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 ULBP1Q9BZM6 244 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 FAM129AQ9BZQ8 928 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 MCOLN1Q9GZU1 580 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 DDX47Q9H0S4 455 aaKnown RBP15.9■□□□□ 0.14
SCLT1-209ENST00000511426 GDF3Q9NR23 364 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 COMMD8Q9NX08 183 aa15.9■□□□□ 0.14
SCLT1-209ENST00000511426 hCG_1818297A0A087WSY0 165 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 LRRD1A4D1F6 860 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 RAD51CO43502 376 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 HEXIM1O94992 359 aaKnown RBP15.89■□□□□ 0.13
SCLT1-209ENST00000511426 RARAP10276 462 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 IL1R2P27930 398 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 PPM1AP35813 382 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 LMNB2Q03252 620 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 CCDC142Q17RM4 750 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 FAM71BQ8TC56 605 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 PIK3R5Q8WYR1 880 aa15.89■□□□□ 0.13
SCLT1-209ENST00000511426 SEC14L1Q92503 715 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms