RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 P3H1Q32P28 736 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 PPP1R15BQ5SWA1 713 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ALKAL1Q6UXT8 129 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ASRGL1Q7L266 308 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 NT5DC4Q86YG4 428 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SRRM1Q8IYB3 904 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 GPATCH11Q8N954 259 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 C12orf29Q8N999 325 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ZNF296Q8WUU4 475 aaPredicted RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 WNT8BQ93098 351 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 FAXDC2Q96IV6 333 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 HEXIM2Q96MH2 286 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 HEMGNQ9BXL5 484 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 CYP3A43Q9HB55 503 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 BATF3Q9NR55 127 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 NOP53Q9NZM5 478 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 CNTN3Q9P232 1028 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 BARX2Q9UMQ3 279 aaPredicted RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 EFR3BQ9Y2G0 817 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SNX9Q9Y5X1 595 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 CASP8AP2Q9UKL3 1982 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 RALGAPA2Q2PPJ7 1873 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 EXOC1LA0A1B0GW35 172 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 M0QYV0 167 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 ALOX15BO15296 676 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 DCTN3O75935 186 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 MICAL2O94851 1124 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 TAC1P20366 129 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 CYP3A5P20815 502 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 RASSF2P50749 326 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 CRYBB1P53674 252 aaPredicted RBP11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 GJA9P57773 515 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 MYO1EQ12965 1108 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 NBPF20Q3BBV1 942 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 ATP13A4Q4VNC1 1196 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 UBXN11Q5T124 520 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 DCUN1D2Q6PH85 259 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 CENPUQ71F23 418 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 APBB1IPQ7Z5R6 666 aaPredicted RBP11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 TRABD2AQ86V40 505 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 LHX5Q9H2C1 402 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 GOLGA2P5Q9HBQ8 144 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 SHOC2Q9UQ13 582 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 ZNF148Q9UQR1 794 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 USH1CQ9Y6N9 552 aa11.52□□□□□ -0.56
SH3RF1-203ENST00000508685 HNRNPCL1O60812 293 aaKnown RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ASMTLO95671 621 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 STAU1O95793 577 aaKnown RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ERBB2P04626 1255 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ITGAVP06756 1048 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CTSHP09668 335 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 GNAT1P11488 350 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ELNP15502 786 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CREB1P16220 341 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 PHBP35232 272 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 RFC1P35251 1148 aaPredicted RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CACNB2Q08289 660 aaPredicted RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 MPP2Q14168 576 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CRYMQ14894 314 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CCDC142Q17RM4 750 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 PARP6Q2NL67 630 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 MFSD14CQ5VZR4 134 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 TXNRD3NBQ6F5E7 133 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 GDF6Q6KF10 455 aaPredicted RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 TLDC1Q6P9B6 456 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CYP4X1Q8N118 509 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ALLCQ8N6M5 410 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ARRDC4Q8NCT1 418 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 GDAP1Q8TB36 358 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 UBA3Q8TBC4 463 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 NKD2Q969F2 451 aaPredicted RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 ACSF2Q96CM8 615 aaPredicted RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 SMC6Q96SB8 1091 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 MRPL45Q9BRJ2 306 aaKnown RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 SYNCQ9H7C4 482 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 CTNNAL1Q9UBT7 734 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 GTF2IRD1Q9UHL9 959 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 RPL26L1Q9UNX3 145 aaKnown RBP11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 DERAQ9Y315 318 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 IPPQ9Y573 584 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 NME7Q9Y5B8 376 aa11.52□□□□□ -0.57
SH3RF1-203ENST00000508685 MKI67P46013 3256 aaKnown RBP11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 SMIM28A0A1B0GU29 152 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 PIK3R2O00459 728 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 HCRTO43612 131 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 UNC5CO95185 931 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 TSHRP16473 764 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 AXLP30530 894 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 GBP2P32456 591 aaPredicted RBP11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 MSH2P43246 934 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 GPD2P43304 727 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 SOX4Q06945 474 aaPredicted RBP11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 FAM47CQ5HY64 1035 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 C9orf57Q5W0N0 161 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 TWF2Q6IBS0 349 aaKnown RBP11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 SESTD1Q86VW0 696 aa11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 AGGF1Q8N302 714 aaeCLIP11.51□□□□□ -0.57
SH3RF1-203ENST00000508685 FITM2Q8N6M3 262 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms