RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NPPBP16860 134 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 NTSR1P30989 418 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 MTHFSP49914 203 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ATXN1P54253 815 aaKnown RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 BLOC1S1P78537 153 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 TIAL1Q01085 375 aaKnown RBP eCLIP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 FOXO1Q12778 655 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ATP1A4Q13733 1029 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 PTPRRQ15256 657 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 TRIM71Q2Q1W2 868 aaKnown RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 TMEM95Q3KNT9 176 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 HSP90AB4PQ58FF6 505 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 TEDDM1Q5T9Z0 273 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZNF354CQ86Y25 554 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 RAB11FIP4Q86YS3 637 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 RASGRP3Q8IV61 690 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 SMAP1Q8IYB5 467 aaPredicted RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 LCORLQ8N3X6 602 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 MBD3L2Q8NHZ7 208 aaPredicted RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 GLG1Q92896 1179 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 GRAMD1AQ96CP6 724 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 FBXL20Q96IG2 436 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ISCA1Q9BUE6 129 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 MLST8Q9BVC4 326 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ALG8Q9BVK2 526 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 VN1R3Q9BXE9 311 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 KLC4Q9NSK0 619 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 LUZP4Q9P127 313 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 GRHPRQ9UBQ7 328 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 VPS51Q9UID3 782 aa4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 DRG1Q9Y295 367 aaKnown RBP4.75□□□□□ -1.65
HMGB1P28-201ENST00000507778 ADGRA2Q96PE1 1338 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 AGPSO00116 658 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 PSMD9O00233 223 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 TRIM38O00635 465 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZSCAN9O15535 394 aaPredicted RBP4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ASNA1O43681 348 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 USP1O94782 785 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 NTSR2O95665 410 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ONECUT2O95948 504 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 VIPP01282 170 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ERBB2P04626 1255 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 CHRM2P08172 466 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 CD19P15391 556 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 RBL1P28749 1068 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 LIPAP38571 399 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 FOLR3P41439 243 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 POLE2P56282 527 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 TIRAPP58753 221 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 PRKG1Q13976 671 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 TREML2Q5T2D2 321 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZNF618Q5T7W0 954 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 FNDC7Q5VTL7 733 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ABLIM2Q6H8Q1 611 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 CLEC9AQ6UXN8 241 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 LDHAL6AQ6ZMR3 332 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 MAVSQ7Z434 540 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 CAND1Q86VP6 1230 aaKnown RBP4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 FSTL5Q8N475 847 aaPredicted RBP4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 C11orf44Q8N8P7 122 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 TBC1D20Q96BZ9 403 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 EID2BQ96D98 161 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 KATNAL1Q9BW62 490 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 SORBS1Q9BX66 1292 aaKnown RBP4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 TMEM120AQ9BXJ8 343 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZNF341Q9BYN7 854 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 KRTAP4-9Q9BYQ8 210 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 EHD3Q9NZN3 535 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 SCAF8Q9UPN6 1271 aaKnown RBP4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 PCDHGB3Q9Y5G1 929 aa4.74□□□□□ -1.65
HMGB1P28-201ENST00000507778 MPPED1O15442 326 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 LMNAP02545 664 aaKnown RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 FESP07332 822 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 ITGA2BP08514 1039 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 HKR1P10072 659 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 YY1P25490 414 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 ZEB1P37275 1124 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 RENBPP51606 427 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 ALDH18A1P54886 795 aaKnown RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 TAP1Q03518 808 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 BIRC3Q13489 604 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 FHL3Q13643 280 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 BMPR2Q13873 1038 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 TTC30AQ86WT1 665 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 CCDC117Q8IWD4 279 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 SOCS4Q8WXH5 440 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 R3HDM4Q96D70 268 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 RSPRY1Q96DX4 576 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 HAPLN3Q96S86 360 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 DPCDQ9BVM2 203 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 EPS8L2Q9H6S3 715 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 TRIM36Q9NQ86 728 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 DKK3Q9UBP4 350 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 NKX1-2Q9UD57 310 aaPredicted RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 STEAP1Q9UHE8 339 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 HERC5Q9UII4 1024 aaKnown RBP4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 RIMKLBQ9ULI2 386 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 SLC27A6Q9Y2P4 619 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 DGKBQ9Y6T7 804 aa4.73□□□□□ -1.65
HMGB1P28-201ENST00000507778 COL15A1P39059 1388 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms