RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 FBXO44Q9H4M3 255 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 DEC1Q9P2X7 70 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 SPTBN2O15020 2390 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 PTPRJQ12913 1337 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 PTPRDP23468 1912 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 TPRP12270 2363 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 TBC1D3BA6NDS4 549 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 TMEM8BA6NDV4 472 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 HOXC13P31276 330 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 TIE1P35590 1138 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 USP46P62068 366 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 E2F5Q15329 346 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 CCDC142Q17RM4 750 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 ZNF699Q32M78 642 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 NAIF1Q69YI7 327 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 UNC13DQ70J99 1090 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 SYT12Q8IV01 421 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 ALLCQ8N6M5 410 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 LINC00301Q8NCQ3 95 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 CEP76Q8TAP6 659 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 EZH1Q92800 747 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 MRPL45Q9BRJ2 306 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 FGFBP2Q9BYJ0 223 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 LSM7Q9UK45 103 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 INVSQ9Y283 1065 aa22.33■■□□□ 1.17
SQSTM1-210ENST00000506042 THADAQ6YHU6 1953 aa22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 SH3PXD2AQ5TCZ1 1133 aa22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 XPO6Q96QU8 1125 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 DUSP9Q99956 384 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 C7orf25Q9BPX7 421 aa22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 RNF38Q9H0F5 515 aa22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 POLR3BQ9NW08 1133 aaPredicted RBP22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 TFIP11Q9UBB9 837 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-210ENST00000506042 NUP205Q92621 2012 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 A0A087X0B3 334 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 PVALEFA0A1B0GWK0 134 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 PROS1P07225 676 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 P2RY2P41231 377 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 ANO4Q32M45 955 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 TRIM61Q5EBN2 209 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 LYSMD4Q5XG99 296 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 EPM2AIP1Q7L775 607 aaPredicted RBP22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 NELFCDQ8IXH7 590 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 C12orf56Q8IXR9 622 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 CEP57L1Q8IYX8 460 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 HDDC3Q8N4P3 179 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 IL17RCQ8NAC3 791 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 HMGB4Q8WW32 186 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 IMPG2Q9BZV3 1241 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 ZNF518BQ9C0D4 1074 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 MTMR6Q9Y217 621 aa22.31■■□□□ 1.16
SQSTM1-210ENST00000506042 A0A0A0MRY4 1105 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 CLIC2O15247 247 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 ZNF217O75362 1048 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 KIF20AO95235 890 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 CST3P01034 146 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 HSP90AA1P07900 732 aaKnown RBP22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 KDSRQ06136 332 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 KNOP1Q1ED39 458 aaKnown RBP22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 UAP1L1Q3KQV9 507 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 TADA2BQ86TJ2 420 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 ZNF513Q8N8E2 541 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 OLIG1Q8TAK6 271 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 FAM84AQ96KN4 292 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 VRTNQ9H8Y1 702 aa22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 TLR8Q9NR97 1041 aaKnown RBP22.3■■□□□ 1.16
SQSTM1-210ENST00000506042 TCRBV21S2A2A0A5A6 115 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 HOXC11O43248 304 aaPredicted RBP22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 MYL6P60660 151 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 FOXC1Q12948 553 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 E2F4Q16254 413 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 LY6G5CQ5SRR4 150 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 SNX30Q5VWJ9 437 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 RHBDF2Q6PJF5 856 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 FAM35AQ86V20 835 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 TAF4BQ92750 862 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 B3GNT5Q9BYG0 378 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 WDR35Q9P2L0 1181 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 SDK1Q7Z5N4 2213 aa22.29■■□□□ 1.16
SQSTM1-210ENST00000506042 EPG5Q9HCE0 2579 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 K7ELQ4 463 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 TGFB1I1O43294 461 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 COCHO43405 550 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 RPN1P04843 607 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 GFPT1Q06210 699 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 NCOA4Q13772 614 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 HNRNPDQ14103 355 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 SGSM1Q2NKQ1 1148 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 ATL3Q6DD88 541 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 GRAMD4Q6IC98 578 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 UNQ6494/PRO21346Q6UXR6 183 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 SCFD1Q8WVM8 642 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 HPS3Q969F9 1004 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 CCDC47Q96A33 483 aaKnown RBP22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 SPHK2Q9NRA0 654 aa22.28■■□□□ 1.16
SQSTM1-210ENST00000506042 SGK1O00141 431 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 POLR2DO15514 142 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 AP1G2O75843 785 aa22.27■■□□□ 1.16
SQSTM1-210ENST00000506042 CFIP05156 583 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms