RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HEY2Q9UBP5 337 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 TNFSF13BQ9Y275 285 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 F8W8V4 182 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 NR2C2P49116 596 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 OVGP1Q12889 678 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 CCDC88AQ3V6T2 1871 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 C16orf89Q6UX73 402 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 PDZD8Q8NEN9 1154 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 USP33Q8TEY7 942 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ELMO2Q96JJ3 720 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 KCNK16Q96T55 309 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 PCDHB18PQ96TA0 734 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 BEGAINQ9BUH8 593 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 DMAC2Q9NW81 257 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ATXN2Q99700 1313 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ANXA9O76027 345 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 PYGBP11216 843 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 CPB1P15086 417 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 KDELR1P24390 212 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 RARS2Q5T160 578 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 POTEAQ6S8J7 498 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 PLPPR4Q7Z2D5 763 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ARID3BQ8IVW6 561 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 AGR3Q8TD06 166 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 TRPA1O75762 1119 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 GJB6O95452 261 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 MIPP30301 263 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 SERPINB8P50452 374 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 HADHBP55084 474 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 VGLL4Q14135 290 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 DAB2IPQ5VWQ8 1189 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC27A1Q6PCB7 646 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 DCP1BQ8IZD4 617 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 SEMA4DQ92854 862 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 WDCPQ9H6R7 721 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 SIX2Q9NPC8 291 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ADA2Q9NZK5 511 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 TJP2Q9UDY2 1190 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 HAO1Q9UJM8 370 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 L3MBTL1Q9Y468 752 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 CYB561D2O14569 222 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 NVLO15381 856 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 CCNE2O96020 404 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 NSUN2Q08J23 767 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 CNGA2Q16280 664 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ABHD15Q6UXT9 468 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 RFX8Q6ZV50 586 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 RNF135Q8IUD6 432 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 ZBTB18Q99592 522 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 MROH7Q68CQ1 1323 aa11.16□□□□□ -0.62
LIMCH1-205ENST00000503057 AP1G2O75843 785 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ITGAVP06756 1048 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 AXLP30530 894 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ELK3P41970 407 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC12A1Q13621 1099 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 POLNQ7Z5Q5 900 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 APOPT1Q96IL0 206 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CDYLQ9Y232 598 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 GNGT2O14610 69 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 STRNO43815 780 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CALCAP01258 141 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CYP2B6P20813 491 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 XPAP23025 273 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC6A3Q01959 620 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SETD3Q86TU7 594 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 PIP4K2CQ8TBX8 421 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 TRAPPC12Q8WVT3 735 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 LRRC40Q9H9A6 602 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ZFYVE28Q9HCC9 887 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 DDIT4Q9NX09 232 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SNTG2Q9NY99 539 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ORC6Q9Y5N6 252 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 RPS6KL1Q9Y6S9 549 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 AHDC1Q5TGY3 1603 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ATP6V1G2O95670 118 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CALB2P22676 271 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 LHX1P48742 406 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 POLE2P56282 527 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 LENG9Q96B70 501 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 GCNAQ96QF7 691 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 THTPAQ9BU02 230 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 PRDM16Q9HAZ2 1276 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 KLRG2A4D1S0 409 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 NCAM2O15394 837 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SHOX2O60902 331 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 TSHRP16473 764 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 EPHB2P29323 1055 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CDH8P55286 799 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 SPIRE1Q08AE8 756 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CAPRIN2Q6IMN6 1127 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 DENND1BQ6P3S1 775 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 ARHGAP18Q8N392 663 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 CKAP2Q8WWK9 683 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 DNAJC9Q8WXX5 260 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 COG5Q9UP83 839 aa11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 AAR2Q9Y312 384 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-205ENST00000503057 RPLP2P05387 115 aaKnown RBP11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 HOXD10P28358 340 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 PKN2Q16513 984 aaKnown RBP11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms