RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 I3L4J1 428 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 FSCN2O14926 492 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 MDM4O15151 490 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 PHF2O75151 1096 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 DAB1O75553 588 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 KRT1P04264 644 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 PYGMP11217 842 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 CPB1P15086 417 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 BDNFP23560 247 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TKTP29401 623 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 GPR17Q13304 367 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 MRPL58Q14197 206 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 KRT81Q14533 505 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 SLC39A12Q504Y0 691 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 RAB41Q5JT25 222 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 KCNT2Q6UVM3 1135 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 CD300LGQ6UXG3 332 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.84□□□□□ -0.995e-11■■■■■ 37.4
SF3A1-210ENST00000498259 NUP93Q8N1F7 819 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TMEM130Q8N3G9 435 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 FAM172AQ8WUF8 416 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 HNRNPLLQ8WVV9 542 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 ALG3Q92685 438 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 KRT35Q92764 455 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 MAGOHBQ96A72 148 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TRIM43Q96BQ3 446 aaPredicted RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 IGSF21Q96ID5 467 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 CDK5RAP1Q96SZ6 601 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 DDX23Q9BUQ8 820 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 OSBPL8Q9BZF1 889 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TSPYL1Q9H0U9 437 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 ACBD3Q9H3P7 528 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 NGRNQ9NPE2 291 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 ABCC13Q9NSE7 274 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 RBM12Q9NTZ6 932 aaKnown RBP8.84□□□□□ -0.99
SF3A1-210ENST00000498259 DONSONQ9NYP3 566 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 STIM2Q9P246 746 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 MYH10P35580 1976 aa8.84□□□□□ -0.99
SF3A1-210ENST00000498259 TANC1Q9C0D5 1861 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PCNTO95613 3336 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 FAM170AA1A519 330 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 LRRD1A4D1F6 860 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ZBBXA8MT70 800 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PDE2AO00408 941 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 CLDN5O00501 218 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ATP8B1O43520 1251 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 LRCH4O75427 683 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 TRUB2O95900 331 aaKnown RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 LTFP02788 710 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 SOD2P04179 222 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ITGB1P05556 798 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 URODP06132 367 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 RHOXF2BP0C7M4 288 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 SLC2A3P11169 496 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 MIPP30301 263 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 GLUD2P49448 558 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 WDR5P61964 334 aaKnown RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 DR1Q01658 176 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 C2orf54Q08AI8 447 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 GPS2Q13227 327 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ZNF211Q13398 564 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 CUL1Q13616 776 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CCNG2Q16589 344 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PTPROQ16827 1216 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CCDC14Q49A88 953 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 DCAF6Q58WW2 860 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ERMARDQ5T6L9 678 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 BTBD8Q5XKL5 378 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 TPGS2Q68CL5 300 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PM20D1Q6GTS8 502 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 SCYL2Q6P3W7 929 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CEP128Q6ZU80 1094 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PAQR9Q6ZVX9 377 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PDZD4Q76G19 769 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 MON1AQ86VX9 555 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 KLHL7Q8IXQ5 586 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CCDC105Q8IYK2 499 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 FIBCD1Q8N539 461 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 EMC1Q8N766 993 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 BBOF1Q8ND07 529 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CMASQ8NFW8 434 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 OR10T2Q8NGX3 314 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ATL2Q8NHH9 583 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 JOSD2Q8TAC2 188 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 RNF139Q8WU17 664 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 CENPIQ92674 756 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 HAUS1Q96CS2 278 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ZNF689Q96CS4 500 aaPredicted RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 SPATA17Q96L03 361 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 KRT12Q99456 494 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PKMYT1Q99640 499 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 SMOQ99835 787 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 RTP3Q9BQQ7 232 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 RHOXF2Q9BQY4 288 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 PARD6BQ9BYG5 372 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 LRRC19Q9H756 370 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 ZWILCHQ9H900 591 aa8.83□□□□□ -1
SF3A1-210ENST00000498259 OLA1Q9NTK5 396 aaKnown RBP8.83□□□□□ -1
SF3A1-210ENST00000498259 ABI2Q9NYB9 513 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms