RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 BRD8Q9H0E9 1235 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 CATSPERBQ9H7T0 1116 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 PNPLA8Q9NP80 782 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 TLR8Q9NR97 1041 aaKnown RBP8.75□□□□□ -1.01
USP54-215ENST00000497106 WBP1LQ9NX94 342 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 LRRC37A2A6NM11 1700 aa8.75□□□□□ -1.01
USP54-215ENST00000497106 AP3B1O00203 1094 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ABL1P00519 1130 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 NCAM1P13591 858 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ITIH2P19823 946 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ACAT1P24752 427 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 GABRB2P47870 512 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 PPP6R3Q5H9R7 873 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 ITPRIPL1Q6GPH6 555 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 AGMOQ6ZNB7 445 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ARHGEF18Q6ZSZ5 1173 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 PIGZQ86VD9 579 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 CCDC25Q86WR0 208 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SLC7A14Q8TBB6 771 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 TFAP2BQ92481 460 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SEPT5Q99719 369 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 TTPALQ9BTX7 342 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SLC4A5Q9BY07 1137 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 DDX47Q9H0S4 455 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 ACP6Q9NPH0 428 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 C9IYK1 514 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 LTFP02788 710 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 STIP1P31948 543 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 MRPS5P82675 430 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 DNAJC21Q5F1R6 531 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 CCSAPQ6IQ19 270 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 FAM126BQ8IXS8 530 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ELMO3Q96BJ8 720 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 MS4A14Q96JA4 679 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 TTC25Q96NG3 672 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SERPINB11Q96P15 392 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 AGO3Q9H9G7 860 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 PAK6Q9NQU5 681 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 TBC1D13Q9NVG8 400 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 EEF2KO00418 725 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 PSMD3O43242 534 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 CYP11A1P05108 521 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 TNFRSF8P28908 595 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 HTR7P34969 479 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 DYNLT1P63172 113 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 IRX5P78411 483 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 NME3Q13232 169 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SNX1Q13596 522 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 TRIM60Q495X7 471 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 PAN2Q504Q3 1202 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 ERMARDQ5T6L9 678 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 DPY19L2P1Q6NXN4 242 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ZMAT2Q96NC0 199 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 HEMGNQ9BXL5 484 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 EMILIN2Q9BXX0 1053 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 YY1AP1Q9H869 796 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 GOLGA2P5Q9HBQ8 144 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.74□□□□□ -1.01
USP54-215ENST00000497106 RCOR3Q9P2K3 495 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 NENFQ9UMX5 172 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 NR2E3Q9Y5X4 410 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 M0QYT0 321 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 KRT14P02533 472 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 GPD2P43304 727 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 CLCN6P51797 869 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 BYSLQ13895 437 aaKnown RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 PDK1Q15118 436 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 UPP1Q16831 310 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SLC39A12Q504Y0 691 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 LHX8Q68G74 356 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ANKRD7Q92527 254 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 FBXO32Q969P5 355 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 BTBD6Q96KE9 485 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 FAM84AQ96KN4 292 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 VIPAS39Q9H9C1 493 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 SPG21Q9NZD8 308 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 TIMM13Q9Y5L4 95 aaPredicted RBP8.74□□□□□ -1.01
USP54-215ENST00000497106 RAD54BQ9Y620 910 aa8.74□□□□□ -1.01
USP54-215ENST00000497106 ENPP3O14638 875 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 NCAM2O15394 837 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 MATKP42679 507 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 NR2C2P49116 596 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 EIF3EP60228 445 aaKnown RBP8.73□□□□□ -1.01
USP54-215ENST00000497106 PLEKHG4Q58EX7 1191 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 LGSNQ5TDP6 509 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 ARCQ7LC44 396 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 FIBCD1Q8N539 461 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 HASPINQ8TF76 798 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 WNT8BQ93098 351 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 ABCB6Q9NP58 842 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.73□□□□□ -1.01
USP54-215ENST00000497106 PRRG1O14668 218 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 DDX3YO15523 660 aaKnown RBP8.73□□□□□ -1.01
USP54-215ENST00000497106 YWHAQP27348 245 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 EPHB3P54753 998 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 C1QTNF8P60827 252 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 HEATR6Q6AI08 1181 aaKnown RBP8.73□□□□□ -1.01
USP54-215ENST00000497106 FUT10Q6P4F1 479 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 ANKRD33Q7Z3H0 272 aa8.73□□□□□ -1.01
USP54-215ENST00000497106 TMEM110Q86TL2 294 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms