RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 CSNK1G1Q9HCP0 422 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 KRT82Q9NSB4 513 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 SMPD4Q9NXE4 827 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 CFAP97Q9P2B7 532 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 TBC1D14Q9P2M4 693 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 ZNF638Q14966 1978 aaKnown RBP13.5□□□□□ -0.25
PTPRF-214ENST00000496043 CCDC163A0A0D9SF12 145 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 E2F8A0AVK6 867 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 FAM92AA1XBS5 289 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 COCHO43405 550 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 BEST1O76090 585 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 RETP07949 1114 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 FAM200BP0CF97 657 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 EPB41P11171 864 aaKnown RBP13.49□□□□□ -0.25
PTPRF-214ENST00000496043 ADORA2BP29275 332 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 PRCPP42785 496 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 INCA1Q0VD86 236 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 LPAL2Q16609 132 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 COBLL1Q53SF7 1204 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 ZNF658Q5TYW1 1059 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-214ENST00000496043 NAIF1Q69YI7 327 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-214ENST00000496043 PKN3Q6P5Z2 889 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 CEP68Q76N32 757 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 ERMP1Q7Z2K6 904 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 SMYD4Q8IYR2 804 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-214ENST00000496043 ZMIZ2Q8NF64 920 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 SMARCE1Q969G3 411 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 FAXDC2Q96IV6 333 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 TIGD1Q96MW7 591 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 NIF3L1Q9GZT8 377 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 FAM49BQ9NUQ9 324 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 HMGXB4Q9UGU5 601 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 PCDHA5Q9Y5H7 936 aa13.49□□□□□ -0.25
PTPRF-214ENST00000496043 ZDHHC11BP0C7U3 371 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 SDHBP21912 280 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 TUBP50607 506 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 FKBP3Q00688 224 aaKnown RBP13.48□□□□□ -0.25
PTPRF-214ENST00000496043 SRSF5Q13243 272 aaKnown RBP13.48□□□□□ -0.25
PTPRF-214ENST00000496043 PUM1Q14671 1186 aaKnown RBP eCLIP13.48□□□□□ -0.25
PTPRF-214ENST00000496043 DHCR24Q15392 516 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 RHBDF2Q6PJF5 856 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 TTC39CQ8N584 583 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 FBXL13Q8NEE6 735 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 RMDN1Q96DB5 314 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 OTUB2Q96DC9 234 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 EEF2KMTQ96G04 330 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 HEXIM2Q96MH2 286 aaKnown RBP13.48□□□□□ -0.25
PTPRF-214ENST00000496043 NACA2Q9H009 215 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 TLR8Q9NR97 1041 aaKnown RBP13.48□□□□□ -0.25
PTPRF-214ENST00000496043 RAB20Q9NX57 234 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 GMIPQ9P107 970 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 USP18Q9UMW8 372 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 SH3BP1Q9Y3L3 701 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 DMDP11532 3685 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 GVINP1Q7Z2Y8 2422 aa13.48□□□□□ -0.25
PTPRF-214ENST00000496043 PRR5-ARHGAP8B1AHC4 643 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 CILPO75339 1184 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 CD58P19256 250 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 HOXC13P31276 330 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 OPRD1P41143 372 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 PXNP49023 591 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-214ENST00000496043 ARHGAP8P85298 464 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 ANKRD40Q6AI12 368 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 SYT13Q7L8C5 426 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 ELOA2Q8IYF1 753 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-214ENST00000496043 RPLP0P6Q8NHW5 317 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 SPATA20Q8TB22 786 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 WHAMMQ8TF30 809 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 SEMA4DQ92854 862 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 ACDQ96AP0 544 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 TWNKQ96RR1 684 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 PNKPQ96T60 521 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 CCSER2Q9H7U1 834 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 SCML2Q9UQR0 700 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 OTOGLQ3ZCN5 2332 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 GREB1Q4ZG55 1949 aa13.47□□□□□ -0.25
PTPRF-214ENST00000496043 OBSL1O75147 1896 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 GPR179Q6PRD1 2367 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 K7EQS6 105 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 LRP3O75074 770 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ADH1CP00326 375 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 CYP17A1P05093 508 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ACO1P21399 889 aaKnown RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 TGM1P22735 817 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ATP5C1P36542 298 aaKnown RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 SLC6A11P48066 632 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 MXI1P50539 228 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 GAD2Q05329 585 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 SPEM2Q0P670 501 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 STIM1Q13586 685 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 DMC1Q14565 340 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 RSPO4Q2I0M5 234 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ZNF394Q53GI3 561 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 TCERG1LQ5VWI1 586 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 CLEC20AQ6ZU45 233 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 CACNA2D4Q7Z3S7 1137 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 GAB3Q8WWW8 586 aa13.46□□□□□ -0.25
PTPRF-214ENST00000496043 EZH1Q92800 747 aaPredicted RBP13.46□□□□□ -0.25
PTPRF-214ENST00000496043 TATDN2Q93075 761 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms