RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HES2Q9Y543 173 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 SCN1AP35498 2009 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 E5RJQ4 531 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 RPL22P35268 128 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 PHKA2P46019 1235 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 GLRA4Q5JXX5 417 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 OR6B2Q6IFH4 312 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 PPP1R2P3Q6NXS1 205 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 C3orf62Q6ZUJ4 267 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 NLRP9Q7RTR0 991 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 TCP10LQ8TDR4 215 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 NKD2Q969F2 451 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 PPP1R12CQ9BZL4 782 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 DENND2DQ9H6A0 471 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 LGALS13Q9UHV8 139 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 USP18Q9UMW8 372 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 CXCL11O14625 94 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 MED7O43513 233 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 TMEM63AO94886 807 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 ITGAVP06756 1048 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 GPD2P43304 727 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 HIF1AQ16665 826 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 HADHQ16836 314 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 CAPRIN2Q6IMN6 1127 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 SCYL2Q6P3W7 929 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 DSTYKQ6XUX3 929 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 CCDC125Q86Z20 511 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 ZNF75CPQ92670 426 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 PCDH9Q9HC56 1237 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 PRMT7Q9NVM4 692 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 PEX11AO75192 247 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 TAP1Q03518 808 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 RIPK1Q13546 671 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 TMEM132DQ14C87 1099 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 KIZQ2M2Z5 673 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 C1orf228Q6PIY5 440 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 CLUHO75153 1309 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 SBF1O95248 1867 aa17.25■□□□□ 0.35
CCDC88B-210ENST00000494566 TCEA3O75764 348 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 OSBPP22059 807 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 MORF4L2Q15014 288 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 DRICH1Q6PGQ1 229 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 GBP7Q8N8V2 638 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 PYROXD1Q8WU10 500 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 SLC7A6OSQ96CW6 309 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 MECRQ9BV79 373 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 MAF1Q9H063 256 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 LHX5Q9H2C1 402 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 TSPAN16Q9UKR8 245 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 DRG1Q9Y295 367 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 IL18RAPO95256 599 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 ADORA2AP29274 412 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 CDH6P55285 790 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 EIF3EP60228 445 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 CCDC6Q16204 474 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 KHDC1Q4VXA5 237 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 TAPT1Q6NXT6 567 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 FAM183BPQ6ZVS7 135 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 CENPUQ71F23 418 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 SPATA18Q8TC71 538 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 KIF12Q96FN5 646 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 NAF1Q96HR8 494 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 MAGEB5Q9BZ81 275 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 TXLNGQ9NUQ3 528 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 ARL8BQ9NVJ2 186 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 HEY2Q9UBP5 337 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 KCNH4Q9UQ05 1017 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 USH1CQ9Y6N9 552 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 RNF8O76064 485 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 KRT7P08729 469 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 RBP3P10745 1247 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 FBXO36Q8NEA4 188 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 RXFP2Q8WXD0 754 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 FAM111AQ96PZ2 611 aa17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 FAM49AQ9H0Q0 323 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-210ENST00000494566 TRUB2O95900 331 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 PDGFRAP16234 1089 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 PPIL2Q13356 520 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 ZC3H12AQ5D1E8 599 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 THEMIS2Q5TEJ8 643 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 RNF43Q68DV7 783 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 MAMDC4Q6UXC1 1216 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 BBS12Q6ZW61 710 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 POLNQ7Z5Q5 900 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 ACOT1Q86TX2 421 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 NETO2Q8NC67 525 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 UCMAQ8WVF2 138 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 MIPEPQ99797 713 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 B3GNT5Q9BYG0 378 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 DPP3Q9NY33 737 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 CITO14578 2027 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 EDF1O60869 148 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 KRT36O76013 467 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 TOP3BO95985 862 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 ALADP13716 330 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 SERPINB3P29508 390 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 RCN2Q14257 317 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 ISLR2Q6UXK2 745 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 RELL1Q8IUW5 271 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms