RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TDRD9Q8NDG6 1382 aaKnown RBP5.2□□□□□ -1.58
VPS13A-212ENST00000493341 TFRCP02786 760 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 FCER1AP12319 257 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 HK1P19367 917 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 KCNA3P22001 575 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 LRPAP1P30533 357 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 HOXD13P35453 343 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 GSK3AP49840 483 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 DGKEP52429 567 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 RNASE9P60153 205 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 KCNMA1Q12791 1236 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 SF3A3Q12874 501 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MYO1EQ12965 1108 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TDGQ13569 410 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 BAK1Q16611 211 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 RNF151Q2KHN1 245 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF568Q3ZCX4 644 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 RILPL1Q5EBL4 403 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF484Q5JVG2 852 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ZMYM1Q5SVZ6 1142 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 FAM69AQ5T7M9 428 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 EFCAB12Q6NXP0 572 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TAF2Q6P1X5 1199 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TMEM108Q6UXF1 575 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TMTC3Q6ZXV5 915 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TMEM171Q8WVE6 324 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 NELL1Q92832 810 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 HIST1H2AAQ96QV6 131 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MECRQ9BV79 373 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ALDH8A1Q9H2A2 487 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 SH3GLB2Q9NR46 395 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 EIF2B3Q9NR50 452 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 PCMTD2Q9NV79 361 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ETAA1Q9NY74 926 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 BAG5Q9UL15 447 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 CAMK2AQ9UQM7 478 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 BTBD11A6QL63 1104 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 PRR5-ARHGAP8B1AHC4 643 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 KIAA0355O15063 1070 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TRIM13O60858 407 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 URI1O94763 535 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 STARD3NLO95772 234 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 CYP21A2P08686 494 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MAPK4P31152 587 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 GCLCP48506 637 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 LOXL3P58215 753 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF844Q08AG5 666 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 RIN1Q13671 783 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 NFIL3Q16649 462 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF569Q5MCW4 686 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 DGAT2L7PQ6IED9 249 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MFSD5Q6N075 450 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TAPT1Q6NXT6 567 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ATG4DQ86TL0 474 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MCRS1Q96EZ8 462 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MARS2Q96GW9 593 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 TRIM5Q9C035 493 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 MCOLN1Q9GZU1 580 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 CXorf36Q9H7Y0 433 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 LIN7CQ9NUP9 197 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ADD3Q9UEY8 706 aaKnown RBP5.19□□□□□ -1.58
VPS13A-212ENST00000493341 ADAM29Q9UKF5 820 aa5.19□□□□□ -1.58
VPS13A-212ENST00000493341 FAM90A20PA6NIJ5 464 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 H3BNC9 293 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 MSTNO14793 375 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PEX10O60683 326 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 DNTTP04053 509 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 RPN1P04843 607 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PSMC2P35998 433 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PGDP52209 483 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ZBED6P86452 979 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 RNASELQ05823 741 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 SLFN5Q08AF3 891 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CUL4AQ13619 759 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 EIF4A2Q14240 407 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 TBCEQ15813 527 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 LRRC24Q50LG9 513 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ATF7IPQ6VMQ6 1270 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 LRRC8DQ7L1W4 858 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ABI1Q8IZP0 508 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 FSTL5Q8N475 847 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 LINS1Q8NG48 757 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CUL5Q93034 780 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ZNF512Q96ME7 567 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CPPED1Q9BRF8 314 aaPredicted RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CCDC134Q9H6E4 229 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PLEKHA2Q9HB19 425 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 IL21RQ9HBE5 538 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 NAALADL1Q9UQQ1 740 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 DRGXA6NNA5 263 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 TOR1BO14657 336 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CD3EAPO15446 510 aaKnown RBP5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PTP4A3O75365 173 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 LARGE1O95461 756 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 SPATA31D3P0C874 917 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 ACADMP11310 421 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 PRKAR1BP31321 381 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 MCM2P49736 904 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 SNX30Q5VWJ9 437 aa5.18□□□□□ -1.58
VPS13A-212ENST00000493341 CLEC9AQ6UXN8 241 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms