RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 C1orf210Q8IVY1 113 aa19.16■□□□□ 0.66
COL9A3-214ENST00000490398 EHBP1Q8NDI1 1231 aa19.16■□□□□ 0.66
COL9A3-214ENST00000490398 ZFRQ96KR1 1074 aaKnown RBP19.16■□□□□ 0.66
COL9A3-214ENST00000490398 ZSWIM1Q9BR11 485 aa19.16■□□□□ 0.66
COL9A3-214ENST00000490398 DUSP16Q9BY84 665 aa19.16■□□□□ 0.66
COL9A3-214ENST00000490398 C8orf33Q9H7E9 229 aaPredicted RBP19.16■□□□□ 0.66
COL9A3-214ENST00000490398 LMAN1LQ9HAT1 526 aa19.16■□□□□ 0.66
COL9A3-214ENST00000490398 FBRSL1Q9HCM7 1045 aaKnown RBP19.16■□□□□ 0.66
COL9A3-214ENST00000490398 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.16■□□□□ 0.66
COL9A3-214ENST00000490398 ZNF638Q14966 1978 aaKnown RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 PPP3CCP48454 512 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 MLLT6P55198 1093 aaPredicted RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 APBA1Q02410 837 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 PON2Q15165 354 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 GOLGA7BQ2TAP0 167 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 EML3Q32P44 896 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 SNX30Q5VWJ9 437 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 ALYREFQ86V81 257 aaKnown RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 OSCP1Q8WVF1 389 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 OVCA2Q8WZ82 227 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 TFAP2BQ92481 460 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 KREMEN1Q96MU8 473 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 NT5C1BQ96P26 610 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 NELL2Q99435 816 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 INTS2Q9H0H0 1204 aaKnown RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 SPATA6Q9NWH7 488 aaPredicted RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 COMMD8Q9NX08 183 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 DUS2Q9NX74 493 aaKnown RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 MRPS17Q9Y2R5 130 aaKnown RBP19.15■□□□□ 0.66
COL9A3-214ENST00000490398 WDR87Q6ZQQ6 2873 aa19.15■□□□□ 0.66
COL9A3-214ENST00000490398 P4HA2O15460 535 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 CCDC192P0DO97 292 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 MBL2P11226 248 aaPredicted RBP19.14■□□□□ 0.65
COL9A3-214ENST00000490398 TCF3P15923 654 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 HOXC13P31276 330 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 KIF11P52732 1056 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 MTAPQ13126 283 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 HSP90AA4PQ58FG1 418 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 CC2D1AQ6P1N0 951 aaPredicted RBP19.14■□□□□ 0.65
COL9A3-214ENST00000490398 GJB7Q6PEY0 223 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 Q6ZS52 159 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 SCD5Q86SK9 330 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 RALGPS2Q86X27 583 aaPredicted RBP19.14■□□□□ 0.65
COL9A3-214ENST00000490398 CREBRFQ8IUR6 639 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 PPM1KQ8N3J5 372 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 TTC39CQ8N584 583 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 PDZD8Q8NEN9 1154 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 GBP4Q96PP9 640 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 ECT2Q9H8V3 914 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 C2orf42Q9NWW7 574 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 CFAP97Q9P2B7 532 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 NUDT5Q9UKK9 219 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 SCML2Q9UQR0 700 aa19.14■□□□□ 0.65
COL9A3-214ENST00000490398 A0A1W2PQH9 124 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 CD19P15391 556 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 PFKLP17858 780 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 GJA4P35212 333 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 RPS9P46781 194 aaKnown RBP19.13■□□□□ 0.65
COL9A3-214ENST00000490398 IFNAR2P48551 515 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 PDGFRLQ15198 375 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 HECTD3Q5T447 861 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 TSSK4Q6SA08 328 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 TMEM270Q6UE05 265 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 PIGZQ86VD9 579 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 UBA3Q8TBC4 463 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 CRACR2AQ9BSW2 395 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 TSPAN16Q9UKR8 245 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 PCDHB4Q9Y5E5 795 aa19.13■□□□□ 0.65
COL9A3-214ENST00000490398 ZFHX2Q9C0A1 2572 aaPredicted RBP19.12■□□□□ 0.65
COL9A3-214ENST00000490398 MIA3Q5JRA6 1907 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 PATJQ8NI35 1801 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 O00370 1275 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 MDM4O15151 490 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 SP9P0CG40 484 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 SLC9A1P19634 815 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 TBXAS1P24557 533 aaPredicted RBP19.12■□□□□ 0.65
COL9A3-214ENST00000490398 HOXD11P31277 338 aaPredicted RBP19.12■□□□□ 0.65
COL9A3-214ENST00000490398 PDE4CQ08493 712 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 GAB4Q2WGN9 574 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 FSTL4Q6MZW2 842 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 ANKRD52Q8NB46 1076 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 NDRG1Q92597 394 aaKnown RBP19.12■□□□□ 0.65
COL9A3-214ENST00000490398 CHRDQ9H2X0 955 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 FBXO44Q9H4M3 255 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 FAM124BQ9H5Z6 455 aaPredicted RBP19.12■□□□□ 0.65
COL9A3-214ENST00000490398 PNPLA8Q9NP80 782 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 USP3Q9Y6I4 520 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 R4GN57 208 aa19.12■□□□□ 0.65
COL9A3-214ENST00000490398 FRYLO94915 3013 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 CACNA1IQ9P0X4 2223 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 ANTXRLA6NF34 631 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 NCAM2O15394 837 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 TLR5O60602 858 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 FGFR1OPO95684 399 aaKnown RBP19.11■□□□□ 0.65
COL9A3-214ENST00000490398 TRIM21P19474 475 aaKnown RBP19.11■□□□□ 0.65
COL9A3-214ENST00000490398 MRE11P49959 708 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 PDE6CP51160 858 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 CCINQ13939 588 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 SGO2Q562F6 1265 aa19.11■□□□□ 0.65
COL9A3-214ENST00000490398 PKN3Q6P5Z2 889 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms