RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SNX16P57768 344 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CDR2Q01850 454 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ADIGQ0VDE8 80 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ASIC2Q16515 512 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 RAB41Q5JT25 222 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 STXBP5Q5T5C0 1151 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 SFMBT2Q5VUG0 894 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 TAF3Q5VWG9 929 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 PMF1Q6P1K2 205 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CCDC186Q7Z3E2 898 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 MON1AQ86VX9 555 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 GPIHBP1Q8IV16 184 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 PASD1Q8IV76 773 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 VSTM4Q8IW00 320 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 GJD3Q8N144 294 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ARHGAP18Q8N392 663 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 MAB21L3Q8N8X9 362 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 TMEM35BQ8NCS4 154 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ZSCAN18Q8TBC5 510 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CPLX3Q8WVH0 158 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 DDX1Q92499 740 aaKnown RBP11.45□□□□□ -0.58
VPS13D-210ENST00000489961 NXPE3Q969Y0 559 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 UHRF1Q96T88 793 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ULBP1Q9BZM6 244 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 TRPC7Q9HCX4 862 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CYLDQ9NQC7 956 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CNGB3Q9NQW8 809 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 ST7Q9NRC1 585 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 GMIPQ9P107 970 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CHORDC1Q9UHD1 332 aaPredicted RBP11.45□□□□□ -0.58
VPS13D-210ENST00000489961 CAPN11Q9UMQ6 739 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 LUC7L2Q9Y383 392 aaKnown RBP11.45□□□□□ -0.58
VPS13D-210ENST00000489961 USP3Q9Y6I4 520 aa11.45□□□□□ -0.58
VPS13D-210ENST00000489961 FBXO21O94952 628 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 LSM8O95777 96 aaKnown RBP11.44□□□□□ -0.58
VPS13D-210ENST00000489961 ZBED1O96006 694 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 MMEP08473 750 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 USP17L7P0C7H9 530 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 WEE1P30291 646 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 AVPR1AP37288 418 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 ZBED6P86452 979 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 PDCLQ13371 301 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 SNX30Q5VWJ9 437 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 TXNDC8Q6A555 127 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 TRIM72Q6ZMU5 477 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 SCML4Q8N228 414 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 MSANTD4Q8NCY6 345 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 C1orf131Q8NDD1 294 aaKnown RBP11.44□□□□□ -0.58
VPS13D-210ENST00000489961 SMARCD2Q92925 531 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 ZSWIM3Q96MP5 696 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 ASB16Q96NS5 453 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 SLC46A2Q9BY10 475 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 ZFP14Q9HCL3 533 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 AIPL1Q9NZN9 384 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 IGSF9Q9P2J2 1179 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 LIMD1Q9UGP4 676 aa11.44□□□□□ -0.58
VPS13D-210ENST00000489961 NOCTQ9UK39 431 aaKnown RBP11.44□□□□□ -0.58
VPS13D-210ENST00000489961 HELZP42694 1942 aaKnown RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 A0A1W2PQH9 124 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 C2orf78A6NCI8 922 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 ANHXE9PGG2 379 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 PIK3R2O00459 728 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 DPYSL4O14531 572 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 SART1O43290 800 aaKnown RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 AP5Z1O43299 807 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 GYPCP04921 128 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 CKMP06732 381 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 ZDHHC11BP0C7U3 371 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 RALAP11233 206 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 HDCP19113 662 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 CASP14P31944 242 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 CDH5P33151 784 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 RPL34P49207 117 aaKnown RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 TUBP50607 506 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 FMO1Q01740 532 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 HTR4Q13639 388 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 FAM78AQ5JUQ0 283 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 HECTD3Q5T447 861 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 PM20D1Q6GTS8 502 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 IRF2BP2Q7Z5L9 587 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 TADA2BQ86TJ2 420 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 TMEM110Q86TL2 294 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 ARID3BQ8IVW6 561 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 CMTM8Q8IZV2 173 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 WDTC1Q8N5D0 677 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 ARL14EPQ8N8R7 260 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 IPO4Q8TEX9 1081 aaKnown RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 SLC20A1Q8WUM9 679 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 IRGQQ8WZA9 623 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 SYN2Q92777 582 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 GOLGA1Q92805 767 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 E2F7Q96AV8 911 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 PPP1R13BQ96KQ4 1090 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 NECAB3Q96P71 396 aaPredicted RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 CDK5RAP1Q96SZ6 601 aaKnown RBP11.43□□□□□ -0.58
VPS13D-210ENST00000489961 AGPAT1Q99943 283 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 SLC4A5Q9BY07 1137 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 NACA2Q9H009 215 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 MIS12Q9H081 205 aa11.43□□□□□ -0.58
VPS13D-210ENST00000489961 SYNCQ9H7C4 482 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms