RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 TFAP2BQ92481 460 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 NELL2Q99435 816 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 DDX23Q9BUQ8 820 aaKnown RBP18.3■□□□□ 0.52
MDC1-206ENST00000489540 RNF38Q9H0F5 515 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 HEBP1Q9NRV9 189 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 GKN1Q9NS71 199 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 MRPS17Q9Y2R5 130 aaKnown RBP18.3■□□□□ 0.52
MDC1-206ENST00000489540 USP3Q9Y6I4 520 aa18.3■□□□□ 0.52
MDC1-206ENST00000489540 KANSL1LA0AUZ9 987 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 XPO1O14980 1071 aaKnown RBP18.29■□□□□ 0.52
MDC1-206ENST00000489540 SETSIPP0DME0 302 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 KRT5P13647 590 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 PDE4CQ08493 712 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 CWF19L1Q69YN2 538 aaKnown RBP18.29■□□□□ 0.52
MDC1-206ENST00000489540 ZNF852Q6ZMS4 543 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 CCDC186Q7Z3E2 898 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 SH3RF2Q8TEC5 729 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 MSANTD3Q96H12 275 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 FAM83CQ9BQN1 747 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 KCNH6Q9H252 994 aa18.29■□□□□ 0.52
MDC1-206ENST00000489540 C8orf33Q9H7E9 229 aaPredicted RBP18.29■□□□□ 0.52
MDC1-206ENST00000489540 PTPRDP23468 1912 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 COCHO43405 550 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 PSEN1P49768 467 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 KPNA1P52294 538 aaPredicted RBP18.28■□□□□ 0.52
MDC1-206ENST00000489540 VCPP55072 806 aaKnown RBP18.28■□□□□ 0.52
MDC1-206ENST00000489540 MTF1Q14872 753 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 PDGFRLQ15198 375 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 KRT31Q15323 416 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 ZNF77Q15935 545 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 SKOR2Q2VWA4 1001 aaPredicted RBP18.28■□□□□ 0.52
MDC1-206ENST00000489540 PKDCCQ504Y2 493 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 RAB41Q5JT25 222 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 GJB7Q6PEY0 223 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 C1orf228Q6PIY5 440 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 TPRG1Q6ZUI0 275 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 DDX42Q86XP3 938 aaKnown RBP eCLIP18.28■□□□□ 0.52
MDC1-206ENST00000489540 UBA3Q8TBC4 463 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 ZFYVE19Q96K21 471 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 PRRX2Q99811 253 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 BPIFA3Q9BQP9 254 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 OSBPL6Q9BZF3 934 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 LRRC4Q9HBW1 653 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 SIX2Q9NPC8 291 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 TAB2Q9NYJ8 693 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.28■□□□□ 0.52
MDC1-206ENST00000489540 SIT1Q9Y3P8 196 aa18.28■□□□□ 0.52
MDC1-206ENST00000489540 SMTNL1A8MU46 457 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 LEFTY2O00292 366 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 CYP26A1O43174 497 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 MBL2P11226 248 aaPredicted RBP18.27■□□□□ 0.52
MDC1-206ENST00000489540 CDK11BP21127 795 aaKnown RBP18.27■□□□□ 0.52
MDC1-206ENST00000489540 BRD2P25440 801 aaKnown RBP18.27■□□□□ 0.52
MDC1-206ENST00000489540 PLA2G4AP47712 749 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 USP4Q13107 963 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 ARHGAP44Q17R89 818 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 ANO6Q4KMQ2 910 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 ARHGAP18Q8N392 663 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 TMEM105Q8N8V8 129 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 OSCP1Q8WVF1 389 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 KCTD13Q8WZ19 329 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 NACA2Q9H009 215 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 VPS16Q9H269 839 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 LIMA1Q9UHB6 759 aaKnown RBP18.27■□□□□ 0.52
MDC1-206ENST00000489540 DNAJC12Q9UKB3 198 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 ARIH1Q9Y4X5 557 aaPredicted RBP18.27■□□□□ 0.52
MDC1-206ENST00000489540 CPQQ9Y646 472 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 PIAS3Q9Y6X2 628 aa18.27■□□□□ 0.52
MDC1-206ENST00000489540 LRRC10BA6NIK2 292 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 MED7O43513 233 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 PI15O43692 258 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 TLR5O60602 858 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 ATP5C1P36542 298 aaKnown RBP18.26■□□□□ 0.51
MDC1-206ENST00000489540 USP8P40818 1118 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 TKTL1P51854 596 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 APBA1Q02410 837 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 KCNMA1Q12791 1236 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 NCAPHQ15003 741 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 ITPRIPL2Q3MIP1 535 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 FKBP15Q5T1M5 1219 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 TADA2BQ86TJ2 420 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 ZNF276Q8N554 614 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 TTC16Q8NEE8 873 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 RIN3Q8TB24 985 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 SLC35F5Q8WV83 523 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 SHC3Q92529 594 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 CDK5RAP1Q96SZ6 601 aaKnown RBP18.26■□□□□ 0.51
MDC1-206ENST00000489540 ZSWIM1Q9BR11 485 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 CCSER2Q9H7U1 834 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 CYLDQ9NQC7 956 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 DUS2Q9NX74 493 aaKnown RBP18.26■□□□□ 0.51
MDC1-206ENST00000489540 GTSE1Q9NYZ3 720 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 CLIC5Q9NZA1 410 aa18.26■□□□□ 0.51
MDC1-206ENST00000489540 A0A1W2PQH9 124 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 FAM170BA6NMN3 283 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 NCAM2O15394 837 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 ZBED1O96006 694 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 RALAP11233 206 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 ZNF18P17022 549 aa18.25■□□□□ 0.51
MDC1-206ENST00000489540 PGFP49763 221 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms