RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 CUL2Q13617 745 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 MORC3Q14149 939 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 PREPLQ4J6C6 727 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 SGO2Q562F6 1265 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 BTBD8Q5XKL5 378 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NUDT18Q6ZVK8 323 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 RSRC2Q7L4I2 434 aaKnown RBP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 SPEM1Q8N4L4 309 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 SCAMP5Q8TAC9 235 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 TMEM176AQ96HP8 235 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NT5C1BQ96P26 610 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 IPO9Q96P70 1041 aaKnown RBP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 GBP4Q96PP9 640 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 RBM12Q9NTZ6 932 aaKnown RBP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NCDNQ9UBB6 729 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 DACH1Q9UI36 760 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NAGPAQ9UK23 515 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 SLC8A2Q9UPR5 921 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NME7Q9Y5B8 376 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 NOTCH4Q99466 2003 aa9.64□□□□□ -0.87
HDAC6-232ENST00000489053 PTPRZ1P23471 2315 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-232ENST00000489053 TLR5O60602 858 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 AFPP02771 609 aaKnown RBP9.63□□□□□ -0.87
HDAC6-232ENST00000489053 ATP5C1P36542 298 aaKnown RBP9.63□□□□□ -0.87
HDAC6-232ENST00000489053 FMO5P49326 533 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 PSEN1P49768 467 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 GOLGA7BQ2TAP0 167 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 EML3Q32P44 896 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 FBXO43Q4G163 708 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CBWD6Q4V339 395 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CBWD3Q5JTY5 395 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CBWD5Q5RIA9 395 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 C10orf120Q5SQS8 335 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 TXNDC11Q6PKC3 985 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 TSSK4Q6SA08 328 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CLEC20AQ6ZU45 233 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CEP68Q76N32 757 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 SIX6OS1Q8N1H7 587 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 ARHGAP18Q8N392 663 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 PPM1KQ8N3J5 372 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 GOLGA1Q92805 767 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 SEMA4DQ92854 862 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 CD101Q93033 1021 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 ACDQ96AP0 544 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 SMOQ99835 787 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 SRRTQ9BXP5 876 aaKnown RBP9.63□□□□□ -0.87
HDAC6-232ENST00000489053 DUSP16Q9BY84 665 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 LRRC4Q9HBW1 653 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 PNPLA8Q9NP80 782 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 HPS4Q9NQG7 708 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 GCNT4Q9P109 453 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 KIAA1468Q9P260 1216 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 GMEB2Q9UKD1 530 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 STRIP2Q9ULQ0 834 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 PCDHB4Q9Y5E5 795 aa9.63□□□□□ -0.87
HDAC6-232ENST00000489053 E2F8A0AVK6 867 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PPP1R3GB7ZBB8 358 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PES1O00541 588 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 TRDMT1O14717 391 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 SCAMP3O14828 347 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 P4HA2O15460 535 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 CYP26A1O43174 497 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 COCHO43405 550 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 OAS1P00973 400 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 CHRNB1P11230 501 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 KRT5P13647 590 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 TCF3P15923 654 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 CD44P16070 742 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 GJA4P35212 333 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 MTIF2P46199 727 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 BCAT1P54687 386 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 SATB1Q01826 763 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 ANO4Q32M45 955 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PPP1R26Q5T8A7 1209 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 HEATR6Q6AI08 1181 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 FOXR2Q6PJQ5 311 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 TMEM270Q6UE05 265 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PRR23BQ6ZRT6 265 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 Q6ZS52 159 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PAQR9Q6ZVX9 377 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 FAM114A1Q8IWE2 563 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 ZC3H3Q8IXZ2 948 aaKnown RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 KIAA1958Q8N8K9 716 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 TATDN2Q93075 761 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 SLC35C1Q96A29 364 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 OTUB2Q96DC9 234 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 TWNKQ96RR1 684 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 ARID3AQ99856 593 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 NUP62CLQ9H1M0 184 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 LINC00597Q9H2U6 94 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 CCSER2Q9H7U1 834 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 CSNK1G1Q9HCP0 422 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 PRMT8Q9NR22 394 aaPredicted RBP9.62□□□□□ -0.87
HDAC6-232ENST00000489053 DNMT3LQ9UJW3 386 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 KIAA1257Q9ULG3 409 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 SCML2Q9UQR0 700 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 ZNF292O60281 2723 aa9.62□□□□□ -0.87
HDAC6-232ENST00000489053 USP34Q70CQ2 3546 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms