RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 SYCE2Q6PIF2 218 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 TRIM72Q6ZMU5 477 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 CLEC20AQ6ZU45 233 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 GPR149Q86SP6 731 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 PIGZQ86VD9 579 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 TTC30AQ86WT1 665 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 PASD1Q8IV76 773 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 LEMD2Q8NC56 503 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 MSANTD4Q8NCY6 345 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 EPS8L1Q8TE68 723 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 PSMG2Q969U7 264 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 HSFY1Q96LI6 401 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 GCNAQ96QF7 691 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 ZSWIM1Q9BR11 485 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 CORO1BQ9BR76 489 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.86□□□□□ -0.67
SKA1-204ENST00000488454 KDM4CQ9H3R0 1056 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 FBXO44Q9H4M3 255 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 HAUS4Q9H6D7 363 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 UBE2ZQ9H832 354 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 PNPLA8Q9NP80 782 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 ASAH2Q9NR71 780 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 ST7Q9NRC1 585 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 COMMD8Q9NX08 183 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 UXTQ9UBK9 157 aaPredicted RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 CD207Q9UJ71 328 aa10.86□□□□□ -0.67
SKA1-204ENST00000488454 PRRC2BQ5JSZ5 2229 aaKnown RBP10.86□□□□□ -0.67
SKA1-204ENST00000488454 H3BQ06 376 aaPredicted RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 MFAP3LO75121 409 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 TBX10O75333 385 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 BEST1O76090 585 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 LSM8O95777 96 aaKnown RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 YWHAQP27348 245 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 LTBRP36941 435 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 PRKCIP41743 596 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 MTHFRP42898 656 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 GPD2P43304 727 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 ACADSBP45954 432 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 PLA2G4AP47712 749 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 SLC5A3P53794 718 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 IFRD2Q12894 506 aaPredicted RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 CLUL1Q15846 466 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 PKDCCQ504Y2 493 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 PDZD4Q76G19 769 aaPredicted RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 GRASPQ7Z6J2 395 aaPredicted RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 SIX6OS1Q8N1H7 587 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 ZMIZ2Q8NF64 920 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 STK32AQ8WU08 396 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 SLC20A1Q8WUM9 679 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 SLC35F5Q8WV83 523 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 DDX1Q92499 740 aaKnown RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 MSLNLQ96KJ4 702 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 MIS12Q9H081 205 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 S1PR5Q9H228 398 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 DEF6Q9H4E7 631 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 SYNCQ9H7C4 482 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 ABHD10Q9NUJ1 306 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 NOCTQ9UK39 431 aaKnown RBP10.85□□□□□ -0.67
SKA1-204ENST00000488454 FAM50BQ9Y247 325 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 CDH23Q9H251 3354 aa10.85□□□□□ -0.67
SKA1-204ENST00000488454 RHOP08100 348 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 MYL4P12829 197 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 LCP1P13796 627 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 HNRNPH3P31942 346 aaKnown RBP10.84□□□□□ -0.67
SKA1-204ENST00000488454 PPP3CCP48454 512 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 RGS7P49802 495 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 MMP16P51512 607 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 GSDMDP57764 484 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 FMO1Q01740 532 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 MTMR3Q13615 1198 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 AAK1Q2M2I8 961 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 PPP1R2P3Q6NXS1 205 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 PMF1Q6P1K2 205 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 ERICH1Q86X53 443 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 SCAMP5Q8TAC9 235 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 IPO4Q8TEX9 1081 aaKnown RBP10.84□□□□□ -0.67
SKA1-204ENST00000488454 KCTD13Q8WZ19 329 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 FBXO32Q969P5 355 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 ZNF707Q96C28 371 aaPredicted RBP10.84□□□□□ -0.67
SKA1-204ENST00000488454 PPP1R13BQ96KQ4 1090 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 CCDC42Q96M95 316 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 NECTIN4Q96NY8 510 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 SLITRK1Q96PX8 696 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 DNAJC7Q99615 494 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 TMEM30AQ9NV96 361 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 TRPM5Q9NZQ8 1165 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 DNMT3BQ9UBC3 853 aaKnown RBP10.84□□□□□ -0.67
SKA1-204ENST00000488454 FCF1Q9Y324 198 aaKnown RBP10.84□□□□□ -0.67
SKA1-204ENST00000488454 TSC2P49815 1807 aa10.84□□□□□ -0.67
SKA1-204ENST00000488454 HHLA1C9JL84 531 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 TULP2O00295 520 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 TNFRSF10BO14763 440 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 DXOO77932 396 aaKnown RBP10.83□□□□□ -0.68
SKA1-204ENST00000488454 FBXO21O94952 628 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 PAPLNO95428 1278 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 ABL1P00519 1130 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 HMGA1P17096 107 aaKnown RBP10.83□□□□□ -0.68
SKA1-204ENST00000488454 CHRNB2P17787 502 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 FSHRP23945 695 aa10.83□□□□□ -0.68
SKA1-204ENST00000488454 GABRR2P28476 465 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms