RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C12orf29Q8N999 325 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 KCNV2Q8TDN2 545 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 CFAP36Q96G28 342 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 FDXACB1Q9BRP7 624 aaPredicted RBP18.73■□□□□ 0.59
VIM-206ENST00000487938 TBC1D10AQ9BXI6 508 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 SMARCAD1Q9H4L7 1026 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 KANSL3Q9P2N6 904 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 IKBKGQ9Y6K9 419 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 TM9SF1O15321 606 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 EPHB2P29323 1055 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 STIP1P31948 543 aaKnown RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 CLNS1AP54105 237 aaKnown RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 NOMO1Q15155 1222 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 SLC10A6Q3KNW5 377 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 PRPF39Q86UA1 669 aaKnown RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 GPC2Q8N158 579 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 AGGF1Q8N302 714 aaeCLIP18.72■□□□□ 0.59
VIM-206ENST00000487938 NLGN2Q8NFZ4 835 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 OTUD5Q96G74 571 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 ELP3Q9H9T3 547 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 RAB6BQ9NRW1 208 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 NKX1-2Q9UD57 310 aaPredicted RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 HEY1Q9Y5J3 304 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 TEX264Q9Y6I9 313 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 A0A0G2JND7 137 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 C2CD2LO14523 706 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 HBP1O60381 514 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 ENDOD1O94919 500 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 PYGBP11216 843 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 VDRP11473 427 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 PCK1P35558 622 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 ZNF200P98182 395 aaPredicted RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 KRT81Q14533 505 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 KCNJ11Q14654 390 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 ACAP1Q15027 740 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 PARP6Q2NL67 630 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 TTC17Q96AE7 1141 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 RSRC1Q96IZ7 334 aaKnown RBP18.72■□□□□ 0.59
VIM-206ENST00000487938 FAM111AQ96PZ2 611 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 CNPY3Q9BT09 278 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 CSADQ9Y600 493 aa18.72■□□□□ 0.59
VIM-206ENST00000487938 IQANK1A0A1B0GTG1 560 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 C2CD4BA6NLJ0 364 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 KCNN4O15554 427 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 PRPSAP2O60256 369 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 HMGCRP04035 888 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 INHBAP08476 426 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 TROVE2P10155 538 aaKnown RBP eCLIP18.71■□□□□ 0.59
VIM-206ENST00000487938 NEFHP12036 1026 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 SLC45A4Q5BKX6 768 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 GJC2Q5T442 439 aaPredicted RBP18.71■□□□□ 0.59
VIM-206ENST00000487938 CCDC62Q6P9F0 684 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 ILDR2Q71H61 639 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 ALKBH8Q96BT7 664 aaKnown RBP18.71■□□□□ 0.59
VIM-206ENST00000487938 VPS11Q9H270 941 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 PRMT7Q9NVM4 692 aaPredicted RBP18.71■□□□□ 0.59
VIM-206ENST00000487938 TSPAN16Q9UKR8 245 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 VTNP04004 478 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 FAM13CQ8NE31 585 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 INPP5DQ92835 1189 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 RNF157Q96PX1 679 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 PDZD7Q9H5P4 517 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 USP29Q9HBJ7 922 aa18.71■□□□□ 0.59
VIM-206ENST00000487938 SMAPO00193 183 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 C22orf31O95567 290 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 INSRRP14616 1297 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 IL4RP24394 825 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 RBL1P28749 1068 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 CTAGE3PQ8IX95 158 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 PLD5Q8N7P1 536 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 SLC44A1Q8WWI5 657 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 MPHOSPH6Q99547 160 aaKnown RBP18.7■□□□□ 0.58
VIM-206ENST00000487938 TSSK1BQ9BXA7 367 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 CYP3A43Q9HB55 503 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 HEY2Q9UBP5 337 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 BARX2Q9UMQ3 279 aaPredicted RBP18.7■□□□□ 0.58
VIM-206ENST00000487938 KAT6AQ92794 2004 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 PFKMP08237 780 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 BGNP21810 368 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 ATICP31939 592 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 PHKA2P46019 1235 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 TFDP2Q14188 446 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 AMHR2Q16671 573 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 CCDC14Q49A88 953 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 CLNKQ7Z7G1 428 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 CLMNQ96JQ2 1002 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 ZNF570Q96NI8 536 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 MMP19Q99542 508 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 NGRNQ9NPE2 291 aaKnown RBP18.7■□□□□ 0.58
VIM-206ENST00000487938 RBPJLQ9UBG7 517 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 AKT3Q9Y243 479 aa18.7■□□□□ 0.58
VIM-206ENST00000487938 MCM3APO60318 1980 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 ECM2O94769 699 aaPredicted RBP18.69■□□□□ 0.58
VIM-206ENST00000487938 P4HA1P13674 534 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 GM2AP17900 193 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 ARF4P18085 180 aaPredicted RBP18.69■□□□□ 0.58
VIM-206ENST00000487938 KCTD2Q14681 263 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 TMEM132DQ14C87 1099 aa18.69■□□□□ 0.58
VIM-206ENST00000487938 NAA25Q14CX7 972 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms