RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 TAF10Q12962 218 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 DUOXA1Q1HG43 343 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 MINDY1Q8N5J2 469 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 HPDLQ96IR7 371 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 CAMK1GQ96NX5 476 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 MRPL45Q9BRJ2 306 aaKnown RBP16.37■□□□□ 0.21
MCF2L-228ENST00000487354 GTPBP2Q9BX10 602 aaKnown RBP16.37■□□□□ 0.21
MCF2L-228ENST00000487354 PCIF1Q9H4Z3 704 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 CD93Q9NPY3 652 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 OLFML3Q9NRN5 406 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 DNAAF2Q9NVR5 837 aaKnown RBP16.37■□□□□ 0.21
MCF2L-228ENST00000487354 ACACAQ13085 2346 aa16.37■□□□□ 0.21
MCF2L-228ENST00000487354 IGHV1OR15-9A0A0B4J2B8 117 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 H0Y626 953 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 SLC9A3R1O14745 358 aaPredicted RBP16.36■□□□□ 0.21
MCF2L-228ENST00000487354 TRIM66O15016 1216 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 TRIM16O95361 564 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 GCNT3O95395 438 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 ADH1CP00326 375 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 LDHAP00338 332 aaKnown RBP16.36■□□□□ 0.21
MCF2L-228ENST00000487354 PDGFRBP09619 1106 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 TMEM191BP0C7N4 346 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 RPL6Q02878 288 aaKnown RBP16.36■□□□□ 0.21
MCF2L-228ENST00000487354 SF3A1Q15459 793 aaKnown RBP16.36■□□□□ 0.21
MCF2L-228ENST00000487354 SOWAHCQ53LP3 525 aaPredicted RBP16.36■□□□□ 0.21
MCF2L-228ENST00000487354 MDH1BQ5I0G3 518 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 RASSF8Q8NHQ8 419 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 ZNF518BQ9C0D4 1074 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 DPEP3Q9H4B8 488 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 STK17AQ9UEE5 414 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 EXOC7Q9UPT5 735 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 KIF3AQ9Y496 699 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 MYH10P35580 1976 aa16.36■□□□□ 0.21
MCF2L-228ENST00000487354 ARHGAP33O14559 1287 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 HOXC11O43248 304 aaPredicted RBP16.35■□□□□ 0.21
MCF2L-228ENST00000487354 AP5Z1O43299 807 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 COCHO43405 550 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 OPHN1O60890 802 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 TULP3O75386 442 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 GAP43P17677 238 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 ANXA13P27216 316 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 PPP3CCP48454 512 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 GFPT1Q06210 699 aaPredicted RBP16.35■□□□□ 0.21
MCF2L-228ENST00000487354 ZNF33AQ06730 810 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 SCAPQ12770 1279 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 MAPRE1Q15691 268 aaKnown RBP16.35■□□□□ 0.21
MCF2L-228ENST00000487354 CBWD2Q8IUF1 395 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 GPD1LQ8N335 351 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 ZNF513Q8N8E2 541 aaPredicted RBP16.35■□□□□ 0.21
MCF2L-228ENST00000487354 TERB1Q8NA31 727 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 GLIS3Q8NEA6 775 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 CEP76Q8TAP6 659 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 TMX3Q96JJ7 454 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 ACOX2Q99424 681 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 BPTFQ12830 3046 aa16.35■□□□□ 0.21
MCF2L-228ENST00000487354 E2F8A0AVK6 867 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 H3BQV1 296 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 TULP1O00294 542 aaPredicted RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 GREM1O60565 184 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 BMP15O95972 392 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 MBL2P11226 248 aaPredicted RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 NDUFV2P19404 249 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 HOXD13P35453 343 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 MYO1EQ12965 1108 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 BYSLQ13895 437 aaKnown RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 ZNF423Q2M1K9 1284 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 EGFLAMQ63HQ2 1017 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 BBS7Q8IWZ6 715 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 PGBD3Q8N328 593 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 HDDC3Q8N4P3 179 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 NAT16Q8N8M0 369 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 ANKRD36BP1Q96IX9 119 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 DUSP9Q99956 384 aaKnown RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 B3GNT5Q9BYG0 378 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 TRIM9Q9C026 710 aa16.34■□□□□ 0.21
MCF2L-228ENST00000487354 GZF1Q9H116 711 aaPredicted RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 FBXO2Q9UK22 296 aaPredicted RBP16.34■□□□□ 0.21
MCF2L-228ENST00000487354 SETXQ7Z333 2677 aaKnown RBP16.33■□□□□ 0.21
MCF2L-228ENST00000487354 TMEM131Q92545 1883 aa16.33■□□□□ 0.21
MCF2L-228ENST00000487354 CKAP5Q14008 2032 aa16.33■□□□□ 0.21
MCF2L-228ENST00000487354 A0A087X0B3 334 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 CLDN5O00501 218 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 SH3BP5O60239 455 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 TACC1O75410 805 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 PRPF6O94906 941 aaKnown RBP16.33■□□□□ 0.2
MCF2L-228ENST00000487354 ABL1P00519 1130 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 HOXB2P14652 356 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 WASP42768 502 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 PGFP49763 221 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 GAD2Q05329 585 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 C10orf76Q5T2E6 689 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 C19orf48Q6RUI8 117 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 SLC36A4Q6YBV0 504 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 DDX42Q86XP3 938 aaKnown RBP eCLIP16.33■□□□□ 0.2
MCF2L-228ENST00000487354 TMEM25Q86YD3 366 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 KCNV2Q8TDN2 545 aa16.33■□□□□ 0.2
MCF2L-228ENST00000487354 NOC3LQ8WTT2 800 aaKnown RBP16.33■□□□□ 0.2
MCF2L-228ENST00000487354 ADAMTS14Q8WXS8 1223 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms