RNA–Protein interactions for RNA: ENST00000486845.1

PHF1-208, Transcript of PHD finger protein 1, human

TSL 5

Gene PHF1, Length 1,099 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHF1-208	ENST00000486845	IFRD2	Q12894	506 aa	Predicted RBP	21.32	■■□□□ 1
PHF1-208	ENST00000486845	SNRNP35	Q16560	246 aa	Known RBP	21.32	■■□□□ 1
PHF1-208	ENST00000486845	MAP7D1	Q3KQU3	841 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	LY6G5C	Q5SRR4	150 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	EMC10	Q5UCC4	262 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	LYSMD4	Q5XG99	296 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	PGBD3	Q8N328	593 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	GLIS3	Q8NEA6	775 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	OVCA2	Q8WZ82	227 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	ZNF518B	Q9C0D4	1074 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	LRRC27	Q9C0I9	530 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	MBD1	Q9UIS9	605 aa	Predicted RBP	21.32	■■□□□ 1
PHF1-208	ENST00000486845	NME7	Q9Y5B8	376 aa		21.32	■■□□□ 1
PHF1-208	ENST00000486845	EIF3D	O15371	548 aa	Known RBP eCLIP	21.31	■■□□□ 1
PHF1-208	ENST00000486845	ADAM23	O75077	832 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	DLAT	P10515	647 aa	Known RBP	21.31	■■□□□ 1
PHF1-208	ENST00000486845	ENG	P17813	658 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	TNNI1	P19237	187 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	GAD2	Q05329	585 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	WDR72	Q3MJ13	1102 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	PREPL	Q4J6C6	727 aa	Predicted RBP	21.31	■■□□□ 1
PHF1-208	ENST00000486845	BTBD8	Q5XKL5	378 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	SLC23A3	Q6PIS1	610 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	TRMT11	Q7Z4G4	463 aa	Known RBP	21.31	■■□□□ 1
PHF1-208	ENST00000486845	NUP93	Q8N1F7	819 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	PHTF2	Q8N3S3	785 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	KCNV2	Q8TDN2	545 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	GATA6	Q92908	595 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	FBXO32	Q969P5	355 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	CGRRF1	Q99675	332 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	TNMD	Q9H2S6	317 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	TMEM74B	Q9NUR3	256 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	TMEM30A	Q9NV96	361 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	PI4KA	P42356	2102 aa		21.31	■■□□□ 1
PHF1-208	ENST00000486845	ATP8B3	O60423	1300 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	ZZEF1	O43149	2961 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845		A8MXQ7	604 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	CST3	P01034	146 aa	Predicted RBP	21.3	■■□□□ 1
PHF1-208	ENST00000486845	CUL4A	Q13619	759 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	PSMD6	Q15008	389 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	SLC39A14	Q15043	492 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	PEAR1	Q5VY43	1037 aa	Predicted RBP	21.3	■■□□□ 1
PHF1-208	ENST00000486845	FAM173B	Q6P4H8	233 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	NUDT18	Q6ZVK8	323 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	PDILT	Q8N807	584 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	FRMD1	Q8N878	549 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	B3GALNT2	Q8NCR0	500 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	HPS3	Q969F9	1004 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	B3GNT5	Q9BYG0	378 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	DPEP3	Q9H4B8	488 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	PILRB	Q9UKJ0	227 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	SH3BP1	Q9Y3L3	701 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	GON4L	Q3T8J9	2241 aa		21.3	■■□□□ 1
PHF1-208	ENST00000486845	TBC1D3B	A6NDS4	549 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	UPK3BL1	B0FP48	263 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	UPK3BL2	E5RIL1	263 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	HOXC11	O43248	304 aa	Predicted RBP	21.29	■■□□□ 1
PHF1-208	ENST00000486845	AP5Z1	O43299	807 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	COCH	O43405	550 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	STAU1	O95793	577 aa	Known RBP	21.29	■■□□□ 1
PHF1-208	ENST00000486845	HOXD13	P35453	343 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	HECTD3	Q5T447	861 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	SLC36A4	Q6YBV0	504 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	ETFBKMT	Q8IXQ9	262 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	RDH13	Q8NBN7	331 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	CEP76	Q8TAP6	659 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	ZFR	Q96KR1	1074 aa	Known RBP	21.29	■■□□□ 1
PHF1-208	ENST00000486845	ZDHHC4	Q9NPG8	344 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	AGPAT3	Q9NRZ7	376 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	NEUROG3	Q9Y4Z2	214 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	ATRX	P46100	2492 aa		21.29	■■□□□ 1
PHF1-208	ENST00000486845	ATXN2	Q99700	1313 aa	Known RBP	21.29	■■□□□ 1
PHF1-208	ENST00000486845	MYO18A	Q92614	2054 aa	Known RBP	21.28	■■□□□ 1
PHF1-208	ENST00000486845	CLDN5	O00501	218 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	CFI	P05156	583 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	ITPKA	P23677	461 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	TUB	P50607	506 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	ATXN3	P54252	364 aa	Predicted RBP	21.28	■■□□□ 1
PHF1-208	ENST00000486845	CYP24A1	Q07973	514 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	TRPC3	Q13507	836 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	KIAA1211L	Q6NV74	962 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	RABEPK	Q7Z6M1	372 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	PIP4P1	Q86T03	277 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	ZNF513	Q8N8E2	541 aa	Predicted RBP	21.28	■■□□□ 1
PHF1-208	ENST00000486845	ZCCHC14	Q8WYQ9	949 aa	Known RBP	21.28	■■□□□ 1
PHF1-208	ENST00000486845	CCDC127	Q96BQ5	260 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	USP28	Q96RU2	1077 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	DUSP9	Q99956	384 aa	Known RBP	21.28	■■□□□ 1
PHF1-208	ENST00000486845	DEC1	Q9P2X7	70 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	SLC6A14	Q9UN76	642 aa		21.28	■■□□□ 1
PHF1-208	ENST00000486845	ZFYVE26	Q68DK2	2539 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	CACNA1E	Q15878	2313 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	AKAP13	Q12802	2813 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	PCNX2	A6NKB5	2137 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	TULP3	O75386	442 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	SYT1	P21579	422 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	ATIC	P31939	592 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	CYP2J2	P51589	502 aa		21.27	■■□□□ 1
PHF1-208	ENST00000486845	SNRPF	P62306	86 aa	Known RBP	21.27	■■□□□ 1
PHF1-208	ENST00000486845	ASIC1	P78348	528 aa		21.27	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms