RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	NEUROG3	Q9Y4Z2	214 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	NME7	Q9Y5B8	376 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	ITPR1	Q14643	2758 aa		11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	GOLGA4	Q13439	2230 aa	Known RBP	11.29	□□□□□ -0.6
HMGN1-215	ENST00000485550	IGSF10	Q6WRI0	2623 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	TRAV19	A0A0A6YYK7	116 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	C2orf78	A6NCI8	922 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	EXOC3	O60645	756 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	APBB3	O95704	486 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	CKM	P06732	381 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	BCKDHB	P21953	392 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	WARS	P23381	471 aa	Known RBP	11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	CASP4	P49662	377 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	MYL6	P60660	151 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	USP46	P62068	366 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	EHHADH	Q08426	723 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	DMC1	Q14565	340 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	MTF1	Q14872	753 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	PSMD6	Q15008	389 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	WDR72	Q3MJ13	1102 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	MDH1B	Q5I0G3	518 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	RESP18	Q5W5W9	173 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	PMS2CL	Q68D20	193 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	CNNM4	Q6P4Q7	775 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	HS2ST1	Q7LGA3	356 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	CYP2U1	Q7Z449	544 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	LIMS2	Q7Z4I7	341 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	SPATA18	Q8TC71	538 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	TRMT2B	Q96GJ1	504 aa	Known RBP	11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	PCED1B	Q96HM7	432 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	FUBP3	Q96I24	572 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	MYRFL	Q96LU7	910 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	KIF9	Q9HAQ2	790 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	DUS2	Q9NX74	493 aa	Known RBP	11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	NXF1	Q9UBU9	619 aa	Known RBP	11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	MSRB2	Q9Y3D2	182 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	WNT6	Q9Y6F9	365 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	LAMA5	O15230	3695 aa		11.28	□□□□□ -0.6
HMGN1-215	ENST00000485550	APC2	O95996	2303 aa		11.27	□□□□□ -0.6
HMGN1-215	ENST00000485550	FLNB	O75369	2602 aa	Known RBP	11.27	□□□□□ -0.6
HMGN1-215	ENST00000485550	URB1	O60287	2271 aa	Known RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	SPAAR	A0A1B0GVQ0	90 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	PHACTR2	O75167	634 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	ABL1	P00519	1130 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	USP17L7	P0C7H9	530 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	HDC	P19113	662 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	ANXA13	P27216	316 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	GJA4	P35212	333 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	MAGEA11	P43364	429 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	IFNAR2	P48551	515 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	DHPS	P49366	369 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	TNNC1	P63316	161 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	FAM160A1	Q05DH4	1040 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	IFRD2	Q12894	506 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	TRPC3	Q13507	836 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	ZNF268	Q14587	947 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	KCNB1	Q14721	858 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	PDGFRL	Q15198	375 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	ZNF77	Q15935	545 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	VSTM1	Q6UX27	236 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	DENND5B	Q6ZUT9	1274 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	SYT13	Q7L8C5	426 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	CEP57L1	Q8IYX8	460 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	FSIP1	Q8NA03	581 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	PLEKHO2	Q8TD55	490 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	TMC2	Q8TDI7	906 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	SH3RF2	Q8TEC5	729 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	PIGK	Q92643	395 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	EZH1	Q92800	747 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	P2RY13	Q9BPV8	354 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	GZF1	Q9H116	711 aa	Predicted RBP	11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	LINC00597	Q9H2U6	94 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	DPEP3	Q9H4B8	488 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	ECT2	Q9H8V3	914 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	GCNT4	Q9P109	453 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	EBF1	Q9UH73	591 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550	LOC400499	M0QZD8	3231 aa		11.27	□□□□□ -0.61
HMGN1-215	ENST00000485550		A0A1B0GVL5	298 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	PVALEF	A0A1B0GWK0	134 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550		A8MXQ7	604 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550		F8VP50	259 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	CLDN5	O00501	218 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	SCAMP3	O14828	347 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	TACC1	O75410	805 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	PTPN1	P18031	435 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	DRD1	P21728	446 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	MAPK8	P45983	427 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	CACNA2D1	P54289	1103 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	CDH8	P55286	799 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	SNRPF	P62306	86 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	SIM1	P81133	766 aa	Predicted RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	STK4	Q13043	487 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	BIRC3	Q13489	604 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	MAPRE1	Q15691	268 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	KNOP1	Q1ED39	458 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	USP39	Q53GS9	565 aa	Known RBP	11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	CPA6	Q8N4T0	437 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	TSTD1	Q8NFU3	115 aa		11.26	□□□□□ -0.61
HMGN1-215	ENST00000485550	MYCBPAP	Q8TBZ2	947 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms