RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 MBD3L4A6NDZ8 208 aaPredicted RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 MBD3L3A6NE82 208 aaPredicted RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 KCNU1A8MYU2 1149 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 CES2O00748 559 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 TPP1O14773 563 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 CD3EAPO15446 510 aaKnown RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 FRS3O43559 492 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 SPRY2O43597 315 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 PMPCBO75439 489 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 TUBB4AP04350 444 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 PRKCBP05771 671 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 DLDP09622 509 aaKnown RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 ZKSCAN1P17029 563 aaPredicted RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 KLRC1P26715 233 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 CERS1P27544 350 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 GKP32189 559 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 CCNIQ14094 377 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 TBC1D25Q3MII6 688 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 RNF220Q5VTB9 566 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 MORN5Q5VZ52 161 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 GALNT16Q8N428 558 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 LRTOMTQ8WZ04 291 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 NMD3Q96D46 503 aaKnown RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 RSPRY1Q96DX4 576 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 PUS7Q96PZ0 661 aaKnown RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 PPP1R9BQ96SB3 815 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 TRIM5Q9C035 493 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 SEMA4CQ9C0C4 833 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 ZSCAN32Q9NX65 697 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 AFF4Q9UHB7 1163 aaKnown RBP3.98□□□□□ -1.77
VPS50-216ENST00000484954 AMFRQ9UKV5 643 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 TPCN1Q9ULQ1 816 aa3.98□□□□□ -1.77
VPS50-216ENST00000484954 LOC102723971A0A1B0GUV8 181 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 ISM1B1AKI9 464 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 POC1B-GALNT4F8VUJ3 575 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 RAB27BO00194 218 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 RGS10O43665 173 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 RASSF9O75901 435 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 TOP3BO95985 862 aaKnown RBP3.97□□□□□ -1.77
VPS50-216ENST00000484954 APEHP13798 732 aaKnown RBP3.97□□□□□ -1.77
VPS50-216ENST00000484954 NTSR1P30989 418 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 DIO1P49895 249 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 TIRAPP58753 221 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 TIAL1Q01085 375 aaKnown RBP eCLIP3.97□□□□□ -1.77
VPS50-216ENST00000484954 LMAN2Q12907 356 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 DAZAP2Q15038 168 aaPredicted RBP3.97□□□□□ -1.77
VPS50-216ENST00000484954 CYB5RLQ6IPT4 315 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 SERPINA13PQ6UXR4 307 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 CCDC149Q6ZUS6 474 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 C14orf80Q86SX3 495 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 CNGA4Q8IV77 575 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 GALNT4Q8N4A0 578 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 METTL25Q8N6Q8 603 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 SIRT6Q8N6T7 355 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 RPL36ALQ969Q0 106 aaKnown RBP3.97□□□□□ -1.77
VPS50-216ENST00000484954 SUCLG2Q96I99 432 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 ZNF48Q96MX3 618 aaPredicted RBP3.97□□□□□ -1.77
VPS50-216ENST00000484954 VN1R3Q9BXE9 311 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 PRSS22Q9GZN4 317 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 CHST8Q9H2A9 424 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 FAM204AQ9H8W3 233 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 NRIP3Q9NQ35 241 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 MID2Q9UJV3 735 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 HDAC9Q9UKV0 1011 aa3.97□□□□□ -1.77
VPS50-216ENST00000484954 WDR17Q8IZU2 1322 aa3.96□□□□□ -1.77
VPS50-216ENST00000484954 F8W8V4 182 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 MAP4K4O95819 1239 aaPredicted RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 U2AF1L5P0DN76 240 aaPredicted RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 MYCLP12524 364 aaPredicted RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 MYF5P13349 255 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 MCM5P33992 734 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 COPB1P53618 953 aaKnown RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 U2AF1Q01081 240 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS50-216ENST00000484954 STK3Q13188 491 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 KCNAB1Q14722 419 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 SEC23BQ15437 767 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 FAM187BQ17R55 369 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 INSCQ1MX18 579 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 KIAA0753Q2KHM9 967 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 ZNF750Q32MQ0 723 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 Q4G0T1 1027 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 MTHFD1LQ6UB35 978 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 PTCHD4Q6ZW05 846 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 CHST15Q7LFX5 561 aaPredicted RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 MYO1HQ8N1T3 1032 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 APIPQ96GX9 242 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 EFHD1Q9BUP0 239 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 ASAP1Q9ULH1 1129 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 SCAF8Q9UPN6 1271 aaKnown RBP3.96□□□□□ -1.78
VPS50-216ENST00000484954 USP22Q9UPT9 525 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 PCDHGB6Q9Y5F9 930 aa3.96□□□□□ -1.78
VPS50-216ENST00000484954 CACNA1IQ9P0X4 2223 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 SHROOM4Q9ULL8 1493 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 BCAR3O75815 825 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 PIAS2O75928 621 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 ZBED1O96006 694 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 TXNP10599 105 aaKnown RBP3.95□□□□□ -1.78
VPS50-216ENST00000484954 ACVR2AP27037 513 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 PEX2P28328 305 aa3.95□□□□□ -1.78
VPS50-216ENST00000484954 EPHA3P29320 983 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms