RNA–Protein interactions for RNA: ENST00000477360.2

CLCNKA-205, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 5

Gene CLCNKA, Length 400 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-205ENST00000477360 CYLDQ9NQC7 956 aa13.05□□□□□ -0.32
CLCNKA-205ENST00000477360 GREB1Q4ZG55 1949 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 ZNF318Q5VUA4 2279 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 SMTNL1A8MU46 457 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 SLC9A3R1O14745 358 aaPredicted RBP13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 NCAM2O15394 837 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 BEST1O76090 585 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 PON1P27169 355 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 ADORA2BP29275 332 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 AVPR2P30518 371 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 BST2Q10589 180 aaKnown RBP13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 USP4Q13107 963 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 ORC1Q13415 861 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 NCAPHQ15003 741 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 ZNF77Q15935 545 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 ZNF394Q53GI3 561 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 PM20D1Q6GTS8 502 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 MAMSTRQ6ZN01 415 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 SCAMP5Q8TAC9 235 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 CSGALNACT1Q8TDX6 532 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 STK32AQ8WU08 396 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 SHC3Q92529 594 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 OTUB2Q96DC9 234 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 RSPRY1Q96DX4 576 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 KREMEN1Q96MU8 473 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 TSPY26PQ9H489 355 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 UBE2TQ9NPD8 197 aaPredicted RBP13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 PLCB1Q9NQ66 1216 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 SAMSN1Q9NSI8 373 aaKnown RBP13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 TSPAN16Q9UKR8 245 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 PCDHB4Q9Y5E5 795 aa13.04□□□□□ -0.32
CLCNKA-205ENST00000477360 MED7O43513 233 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 CD19P15391 556 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 ZNF18P17022 549 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 RPS9P46781 194 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 RPL34P49207 117 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 BPIFB4P59827 614 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 LRMPQ12912 555 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 MTF1Q14872 753 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 CWF19L1Q69YN2 538 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 CC2D1AQ6P1N0 951 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 PIGZQ86VD9 579 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 TTC30AQ86WT1 665 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 ARHGEF19Q8IW93 802 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 ARL14EPQ8N8R7 260 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 RBBP8NLQ8NC74 664 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 PJA1Q8NG27 643 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 SLC35F5Q8WV83 523 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 OSCP1Q8WVF1 389 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 ATP2A3Q93084 1043 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 CLDN23Q96B33 292 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 HSFY1Q96LI6 401 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 LRRC3BQ96PB8 259 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 TBC1D17Q9HA65 648 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 TBC1D14Q9P2M4 693 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 LIMA1Q9UHB6 759 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 DENND4CQ5VZ89 1909 aa13.03□□□□□ -0.32
CLCNKA-205ENST00000477360 E2F8A0AVK6 867 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 C2orf78A6NCI8 922 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 SLC9A1P19634 815 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 CDR1P51861 262 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 GRM2Q14416 872 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 ITPRIPL2Q3MIP1 535 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 FKBP15Q5T1M5 1219 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 BEND5Q7L4P6 421 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 RRAGAQ7L523 313 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 DHX40Q8IX18 779 aaKnown RBP13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 AOPEPQ8N6M6 819 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 IRGQQ8WZA9 623 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 TRIM62Q9BVG3 475 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 CBX8Q9HC52 389 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 TRPC7Q9HCX4 862 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 CNGB3Q9NQW8 809 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 GKN1Q9NS71 199 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 CA14Q9ULX7 337 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 SIT1Q9Y3P8 196 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 F5P12259 2224 aa13.02□□□□□ -0.33
CLCNKA-205ENST00000477360 MUC6Q6W4X9 2439 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 RNF225M0QZC1 329 aaPredicted RBP13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 SART1O43290 800 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 COCHO43405 550 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 TLR5O60602 858 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 FBXO21O94952 628 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 ZBED1O96006 694 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 PDGFBP01127 241 aaPredicted RBP13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 RALAP11233 206 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 ATP5C1P36542 298 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 PDE4CQ08493 712 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 GOLGA8FQ08AF8 430 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 GOLGA8DPQ0D2H9 430 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 NR1H3Q13133 447 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 RUNX3Q13761 415 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 GOLGA7BQ2TAP0 167 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 DPY19L2P1Q6NXN4 242 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 TPRG1Q6ZUI0 275 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 CREBRFQ8IUR6 639 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 CCDC105Q8IYK2 499 aa13.01□□□□□ -0.33
CLCNKA-205ENST00000477360 SYNPOQ8N3V7 929 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms