RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ACDQ96AP0 544 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SLITRK1Q96PX8 696 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CSNK1G1Q9HCP0 422 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 RXFP3Q9NSD7 469 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 COMMD8Q9NX08 183 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZDHHC9Q9Y397 364 aa13.02□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PLXND1Q9Y4D7 1925 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SLC9A3R1O14745 358 aaPredicted RBP13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 IKBKBO14920 756 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MAPK13O15264 365 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 APBB3O95704 486 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MYL1P05976 194 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TUBP50607 506 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SF3A2Q15428 464 aaKnown RBP13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZNF667Q5HYK9 610 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 FAM35AQ86V20 835 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SFTPA1Q8IWL2 248 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CEP57L1Q8IYX8 460 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PHTF2Q8N3S3 785 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PDZD8Q8NEN9 1154 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCDC26Q8TAB7 109 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ELMO3Q96BJ8 720 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SMOQ99835 787 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CHORDC1Q9UHD1 332 aaPredicted RBP13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 USP25Q9UHP3 1055 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TRAF3IP3Q9Y228 551 aa13.01□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PCNX2A6NKB5 2137 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVL5 298 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 E2F8A0AVK6 867 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DCLK1O15075 740 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 COCHO43405 550 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 GREM1O60565 184 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PHACTR2O75167 634 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 BEST1O76090 585 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ASS1P00966 412 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 RPN1P04843 607 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCDC192P0DO97 292 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HNRNPLP14866 589 aaKnown RBP eCLIP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PFKFB1P16118 471 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KIR2DL1P43626 348 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SLC6A11P48066 632 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PGFP49763 221 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MRPS21P82921 87 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 NFIL3Q16649 462 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SGSM1Q2NKQ1 1148 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZNF699Q32M78 642 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SV2AQ7L0J3 742 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 UNC93AQ86WB7 457 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 C12orf40Q86WS4 652 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DDX42Q86XP3 938 aaKnown RBP eCLIP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HSCBQ8IWL3 235 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ETFBKMTQ8IXQ9 262 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 OLIG1Q8TAK6 271 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TAF4BQ92750 862 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 OTUB2Q96DC9 234 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TNIP3Q96KP6 325 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CNTNAP3BQ96NU0 1288 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CNTNAP3Q9BZ76 1288 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 DMAP1Q9NPF5 467 aaPredicted RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CFAP97Q9P2B7 532 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TBC1D14Q9P2M4 693 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MMP17Q9ULZ9 603 aa13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ASCC3Q8N3C0 2202 aaKnown RBP13□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TNRC6BQ9UPQ9 1833 aaKnown RBP12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 BCLAF3A2AJT9 711 aaKnown RBP12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HHLA1C9JL84 531 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 RHOBTB3O94955 611 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 NR3C1P04150 777 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ASPAP45381 313 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SLC5A3P53794 718 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ENPEPQ07075 957 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 BIRC3Q13489 604 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCDC6Q16204 474 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CRY1Q16526 586 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HSF5Q4G112 596 aaPredicted RBP12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 C2orf27AQ580R0 203 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PPM1JQ5JR12 505 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HECTD3Q5T447 861 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TMEM92Q6UXU6 159 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ACOT1Q86TX2 421 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 IL17RCQ8NAC3 791 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 TTC16Q8NEE8 873 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 FBXO32Q969P5 355 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 WBP2Q969T9 261 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SMARCD1Q96GM5 515 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CNOT6LQ96LI5 555 aaKnown RBP12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 PNKPQ96T60 521 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CCSER2Q9H7U1 834 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 EXOC1Q9NV70 894 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 SMPD4Q9NXE4 827 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HMGXB4Q9UGU5 601 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 HCN2Q9UL51 889 aa12.99□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 CEP192Q8TEP8 1941 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ATP8B3O60423 1300 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ADAM23O75077 832 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 KAT7O95251 611 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 ABL1P00519 1130 aa12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MBL2P11226 248 aaPredicted RBP12.98□□□□□ -0.33
MSH5-SAPCD1-205ENST00000476085 MPLP40238 635 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms