RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 DPEP3Q9H4B8 488 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 FAM124BQ9H5Z6 455 aaPredicted RBP14.37□□□□□ -0.11
CHD3-209ENST00000473376 PNPLA8Q9NP80 782 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 TMEM30AQ9NV96 361 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 TRAF3IP3Q9Y228 551 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 TPRP12270 2363 aaKnown RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 SPAG17Q6Q759 2223 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 HOXC11O43248 304 aaPredicted RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 KAT7O95251 611 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 APODP05090 189 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 MBL2P11226 248 aaPredicted RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 CHRM1P11229 460 aaPredicted RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 CACNA2D1P54289 1103 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 STK4Q13043 487 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 BIRC3Q13489 604 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 EOGTQ5NDL2 527 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 STPG1Q5TH74 334 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 PMS2CLQ68D20 193 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 NAIF1Q69YI7 327 aaPredicted RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 KLHDC10Q6PID8 442 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 PAQR9Q6ZVX9 377 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 TRMT11Q7Z4G4 463 aaKnown RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 FAM35AQ86V20 835 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 HSCBQ8IWL3 235 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 ZNF276Q8N554 614 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 FBXO32Q969P5 355 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 PAGE5Q96GU1 130 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 ZFRQ96KR1 1074 aaKnown RBP14.36□□□□□ -0.11
CHD3-209ENST00000473376 CNTNAP3BQ96NU0 1288 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 CNTNAP3Q9BZ76 1288 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 BLZF1Q9H2G9 400 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 EXOC1Q9NV70 894 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 CFAP97Q9P2B7 532 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 ACACBO00763 2458 aa14.36□□□□□ -0.11
CHD3-209ENST00000473376 FAM237AA0A1B0GTK4 181 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 COCHO43405 550 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 ACTN4O43707 911 aaKnown RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 CAVIN2O95810 425 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 ASS1P00966 412 aaKnown RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 HSP90AA1P07900 732 aaKnown RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 ADH5P11766 374 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 HOXC13P31276 330 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 HOXD12P35452 270 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 KIR2DL1P43626 348 aaPredicted RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 AFMP43652 599 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 SLC5A3P53794 718 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 SF3A2Q15428 464 aaKnown RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 ETFBKMTQ8IXQ9 262 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 FUKQ8N0W3 1084 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 KIAA0895Q8NCT3 520 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 PLEKHO2Q8TD55 490 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 KCNK16Q96T55 309 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 CYP3A43Q9HB55 503 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 POLMQ9NP87 494 aaPredicted RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 CYLDQ9NQC7 956 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 FRMD4BQ9Y2L6 1034 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 STARD13Q9Y3M8 1113 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 SPTBN2O15020 2390 aa14.35□□□□□ -0.11
CHD3-209ENST00000473376 HELZP42694 1942 aaKnown RBP14.35□□□□□ -0.11
CHD3-209ENST00000473376 CALUO43852 315 aaPredicted RBP14.34□□□□□ -0.11
CHD3-209ENST00000473376 VNN1O95497 513 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 ABL1P00519 1130 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 NR3C1P04150 777 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 PMLP29590 882 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 INCA1Q0VD86 236 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 KMT5BQ4FZB7 885 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 C2orf27AQ580R0 203 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 BTBD8Q5XKL5 378 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 HTR3DQ70Z44 454 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 SV2AQ7L0J3 742 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 PHTF2Q8N3S3 785 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 TTC39CQ8N584 583 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 IL17RCQ8NAC3 791 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 WHAMMQ8TF30 809 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 CCDC47Q96A33 483 aaKnown RBP14.34□□□□□ -0.11
CHD3-209ENST00000473376 HNRNPABQ99729 332 aaKnown RBP14.34□□□□□ -0.11
CHD3-209ENST00000473376 SMYD3Q9H7B4 428 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 ARHGEF4Q9NR80 690 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 TLR8Q9NR97 1041 aaKnown RBP14.34□□□□□ -0.11
CHD3-209ENST00000473376 SMPD4Q9NXE4 827 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 EVLQ9UI08 416 aaPredicted RBP14.34□□□□□ -0.11
CHD3-209ENST00000473376 HPSEQ9Y251 543 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 SH3BP1Q9Y3L3 701 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 EPG5Q9HCE0 2579 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 RALGAPA1Q6GYQ0 2036 aa14.34□□□□□ -0.11
CHD3-209ENST00000473376 CLDN5O00501 218 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 AP1G2O75843 785 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 CASP1P29466 404 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 P2RY2P41231 377 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 CASP4P49662 377 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 PSEN1P49768 467 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 CDH8P55286 799 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 GOLGA8FQ08AF8 430 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 GOLGA8DPQ0D2H9 430 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 LY6G5CQ5SRR4 150 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 DAB2IPQ5VWQ8 1189 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 RNF43Q68DV7 783 aa14.33□□□□□ -0.12
CHD3-209ENST00000473376 INTS8Q75QN2 995 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms