RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 EGFP01133 1207 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 TCF3P15923 654 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 PFKLP17858 780 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 SLC5A3P53794 718 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 ZXDBP98169 803 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 CSRP2Q16527 193 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 PRR23CQ6ZRP0 262 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 SYNPOQ8N3V7 929 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 C12orf29Q8N999 325 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 SCAMP5Q8TAC9 235 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 SLC2A14Q8TDB8 520 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 NETO1Q8TDF5 533 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 ERCC4Q92889 916 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 RNF38Q9H0F5 515 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 LINC00597Q9H2U6 94 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 APOBEC3GQ9HC16 384 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 FBRSL1Q9HCM7 1045 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 RMND1Q9NWS8 449 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 SCAMP3O14828 347 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 SLC30A4O14863 429 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 GDF9O60383 454 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 RNF40O75150 1001 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 OAS1P00973 400 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 MBL2P11226 248 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 ADORA2BP29275 332 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 HOXA6P31267 233 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 PXNP49023 591 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 GALK1P51570 392 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 SLC7A9P82251 487 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 EDRF1Q3B7T1 1238 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 CEP68Q76N32 757 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 WDR5BQ86VZ2 330 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 UNC93AQ86WB7 457 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 PDZD8Q8NEN9 1154 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 P2RY13Q9BPV8 354 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 TMEM8AQ9HCN3 771 aa16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 POLR3BQ9NW08 1133 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-205ENST00000472524 TNFRSF10BO14763 440 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CETN3O15182 167 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 BEST1O76090 585 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 NFATC1O95644 943 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 OLFM2O95897 454 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 EPB41P11171 864 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CD58P19256 250 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 TRIM21P19474 475 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 DRD1P21728 446 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 PRCPP42785 496 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 MAP3K7CLP57077 242 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 NR1H3Q13133 447 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 ZNF658Q5TYW1 1059 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 FILIP1Q7Z7B0 1213 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CRYBG2Q8N1P7 616 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CCDC150Q8NCX0 1101 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 ZMIZ2Q8NF64 920 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 ENGASEQ8NFI3 743 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CD101Q93033 1021 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 EXOC4Q96A65 974 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 JAKMIP2Q96AA8 810 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 TWNKQ96RR1 684 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 SMOQ99835 787 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 NIF3L1Q9GZT8 377 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 GMIPQ9P107 970 aa16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 CHORDC1Q9UHD1 332 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-205ENST00000472524 SMC2O95347 1197 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 FAM200BP0CF97 657 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 MXI1P50539 228 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 ENPEPQ07075 957 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 INCA1Q0VD86 236 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 CCDC6Q16204 474 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 PPM1JQ5JR12 505 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 KRT39Q6A163 491 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 OVCA2Q8WZ82 227 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 SMARCE1Q969G3 411 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 GSDMAQ96QA5 445 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 TSG101Q99816 390 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 NT5C1AQ9BXI3 368 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 CYP3A43Q9HB55 503 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 CFAP97Q9P2B7 532 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 SPTBN2O15020 2390 aa16.64■□□□□ 0.25
CCDC88B-205ENST00000472524 AXIN1O15169 862 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 COCHO43405 550 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 ADRB1P08588 477 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 GTF2H1P32780 548 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 DCAF17Q5H9S7 520 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 HECTD3Q5T447 861 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 TCERG1LQ5VWI1 586 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 DDX42Q86XP3 938 aaKnown RBP eCLIP16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 SEMA4DQ92854 862 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 CCSER2Q9H7U1 834 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 CSNK1G1Q9HCP0 422 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 HOOK1Q9UJC3 728 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 SLC8A2Q9UPR5 921 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 PCDHA5Q9Y5H7 936 aa16.63■□□□□ 0.25
CCDC88B-205ENST00000472524 TRIM49BA6NDI0 452 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 SLC9A3R1O14745 358 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 ATG13O75143 517 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 CILPO75339 1184 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 CYP17A1P05093 508 aa16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 PMS1P54277 932 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-205ENST00000472524 SF3A2Q15428 464 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms