RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PRR11Q96HE9 360 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PSD2Q9BQI7 771 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TCHPQ9BT92 498 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 BRD8Q9H0E9 1235 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLC52A3Q9NQ40 469 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 EIF2B3Q9NR50 452 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DLGAP2Q9P1A6 1054 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 EMCNQ9ULC0 261 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TMED5Q9Y3A6 229 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 A0A0J9YVX5 310 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 BMP2P12643 396 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PORP16435 677 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 NFX1Q12986 1120 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GEN1Q17RS7 908 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CEP55Q53EZ4 464 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ZC2HC1CQ53FD0 456 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLX4IPQ5VYV7 408 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SV2AQ7L0J3 742 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 HACE1Q8IYU2 909 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 KIRREL3Q8IZU9 778 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 LZTR1Q8N653 840 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ATP11CQ8NB49 1132 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 FBXL13Q8NEE6 735 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 OR52E4Q8NGH9 312 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 RIN3Q8TB24 985 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CHPT1Q8WUD6 406 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TGFBRAP1Q8WUH2 860 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 FAM193BQ96PV7 902 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLITRK1Q96PX8 696 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 C8orf4Q9NR00 106 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DNAJC28Q9NX36 388 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TAGLN3Q9UI15 199 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 RFC5P40937 340 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLC14A2Q15849 920 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GTF2IRD2BQ6EKJ0 949 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 RFWD3Q6PCD5 774 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 EEPD1Q7L9B9 569 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GTF2IRD2Q86UP8 949 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ULK2Q8IYT8 1036 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 KAT5Q92993 513 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 MTBPQ96DY7 904 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CLSTN3Q9BQT9 956 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 WWP1Q9H0M0 922 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DDX4Q9NQI0 724 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GINM1Q9NU53 330 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 IGKV6-21A0A0C4DH24 114 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PLIN3O60664 434 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ATP9AO75110 1047 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF189O75820 626 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ASS1P00966 412 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 EIF2S1P05198 315 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TPSB2P20231 275 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TNFAIP3P21580 790 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GLRA2P23416 452 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GRK2P25098 689 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PSMA3P25788 255 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLC25A11Q02978 314 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TNK2Q07912 1038 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DCTN2Q13561 401 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TPSAB1Q15661 275 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 LONRF1Q17RB8 773 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CERKLQ49MI3 558 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 NHSL2Q5HYW2 709 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLC9A4Q6AI14 798 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ANKRD13AQ8IZ07 590 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ADGRF2Q8IZF7 708 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CERS5Q8N5B7 392 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ZDHHC15Q96MV8 337 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM55Q9BYV6 548 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 IMPG2Q9BZV3 1241 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 OLAHQ9NV23 265 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SEPT10Q9P0V9 454 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SKAP2O75563 359 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CIB2O75838 187 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 BCAS2O75934 225 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 BBOX1O75936 387 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 WISP3O95389 354 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CPNE6O95741 557 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 BPGMP07738 259 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 VCLP18206 1134 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PCSK6P29122 969 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PPIL2Q13356 520 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CCNIQ14094 377 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 MAPK6Q16659 721 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 WDR44Q5JSH3 913 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DCAF15Q66K64 600 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PACS1Q6VY07 963 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 ADGRF4Q8IZF3 695 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 FBLIM1Q8WUP2 373 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SCG3Q8WXD2 468 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 SLC10A4Q96EP9 437 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 GMLQ99445 158 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 FHDC1Q9C0D6 1143 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PREBQ9HCU5 417 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 DNAAF2Q9NVR5 837 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CPSF2Q9P2I0 782 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 STK38LQ9Y2H1 464 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 RNF11Q9Y3C5 154 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms