RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-210	ENST00000471439	PHACTR3	Q96KR7	559 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ACO2	Q99798	780 aa	Known RBP	4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLITRK6	Q9H5Y7	841 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	ANKFY1	Q9P2R3	1169 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	MAP3K2	Q9Y2U5	619 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	PCDHB1	Q9Y5F3	818 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	FRMPD3	Q5JV73	1810 aa		4.94	□□□□□ -1.62
VPS13A-210	ENST00000471439	FLT4	P35916	1363 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	PSME4	Q14997	1843 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439		A0A087X1B8	175 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	CCDC78	A2IDD5	438 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439		B5MCH6	92 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	LAMA5	O15230	3695 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	AMY1A	P04745	511 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	ALDH2	P05091	517 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	HSP90AB1	P08238	724 aa	Known RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	VCAM1	P19320	739 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	PCSK1	P29120	753 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	AVPR2	P30518	371 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	ALDH1A3	P47895	512 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	CHN2	P52757	468 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	COL10A1	Q03692	680 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC39A6	Q13433	755 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	PGS1	Q32NB8	556 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	GFOD2	Q3B7J2	385 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	KRTAP15-1	Q3LI76	137 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MINDY4	Q4G0A6	757 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	ARHGAP29	Q52LW3	1261 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	METTL24	Q5JXM2	366 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	CCDC181	Q5TID7	509 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MIGA2	Q7L4E1	593 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	OVCH2	Q7RTZ1	564 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MRGPRG	Q86SM5	289 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	PQLC1	Q8N2U9	271 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	OR7D4	Q8NG98	312 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	CCHCR1	Q8TD31	782 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	HDAC10	Q969S8	669 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	FAM193B	Q96PV7	902 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	DMRTA2	Q96SC8	542 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MAP3K14	Q99558	947 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MYOC	Q99972	504 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	C7orf25	Q9BPX7	421 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC28A3	Q9HAS3	691 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	ZCCHC17	Q9NP64	241 aa	Known RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	AKIP1	Q9NQ31	210 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	SAP30BP	Q9UHR5	308 aa	Known RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	MUTYH	Q9UIF7	546 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	ATP11B	Q9Y2G3	1177 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	USP15	Q9Y4E8	981 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	EVC2	Q86UK5	1308 aa		4.93	□□□□□ -1.62
VPS13A-210	ENST00000471439	RELN	P78509	3460 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	EDC4	Q6P2E9	1401 aa	Known RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	GRID2IP	A4D2P6	1211 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	FAM171A2	A8MVW0	826 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	RECQL4	O94761	1208 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	NDUFA10	O95299	355 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	ABHD16A	O95870	558 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	GAST	P01350	101 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	ITGB1	P05556	798 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	RAP2A	P10114	183 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	GUCY1A2	P33402	732 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	ATXN1	P54253	815 aa	Known RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	INHBC	P55103	352 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	SOWAHC	Q53LP3	525 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	HERC4	Q5GLZ8	1057 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	EFCAB12	Q6NXP0	572 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	KCNV1	Q6PIU1	500 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	BEND2	Q8NDZ0	799 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	AGBL3	Q8NEM8	1001 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	NSUN6	Q8TEA1	469 aa	Known RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	COG3	Q96JB2	828 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	ADAM2	Q99965	735 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC46A2	Q9BY10	475 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	BCO1	Q9HAY6	547 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	NIP7	Q9Y221	180 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	RUVBL1	Q9Y265	456 aa	Known RBP	4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	DMRT1	Q9Y5R6	373 aa		4.92	□□□□□ -1.62
VPS13A-210	ENST00000471439	FBN2	P35556	2912 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	GOLGA6C	A6NDK9	693 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	GOLGA6B	A6NDN3	693 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	DRGX	A6NNA5	263 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	OVOL3	O00110	214 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	PRC1	O43663	620 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	PHF2	O75151	1096 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	ENDOD1	O94919	500 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	PRSS23	O95084	383 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	GOLGA6D	P0CG33	693 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	PROZ	P22891	400 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	SLC6A2	P23975	617 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	IL6ST	P40189	918 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	MTHFS	P49914	203 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	MAP2K6	P52564	334 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	PER3	P56645	1201 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	BEAN1	Q3B7T3	259 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	LEXM	Q3ZCV2	418 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	TIGD2	Q4W5G0	525 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	FAM47A	Q5JRC9	791 aa		4.91	□□□□□ -1.62
VPS13A-210	ENST00000471439	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms