RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 COL1A2P08123 1366 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 RBM47A0AV96 593 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 H7C0C1 242 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 GOLGA8RI6L899 631 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 PDHXO00330 501 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 HCRTO43612 131 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 MGRN1O60291 552 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 AVILO75366 819 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 GABBR2O75899 941 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 STAU1O95793 577 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 FGFR1P11362 822 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SMPD1P17405 629 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 RDXP35241 583 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 GRM5P41594 1212 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ATP5OP48047 213 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SLC18A1P54219 525 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KCNJ2P63252 427 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 BNIP1Q12981 228 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KRT81Q14533 505 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 RASA2Q15283 850 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 CA9Q16790 459 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 GLRA4Q5JXX5 417 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 LDLRAD1Q5T700 205 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ADGRD1Q6QNK2 874 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 OLFML1Q6UWY5 402 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ANKLE1Q8NAG6 615 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KHSRPQ92945 711 aaKnown RBP eCLIP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 EMID1Q96A84 441 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 RNF157Q96PX1 679 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KLF6Q99612 283 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 EIF2AQ9BY44 585 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 FAM49AQ9H0Q0 323 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 C12orf65Q9H3J6 166 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ACSS3Q9H6R3 686 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 CDHR5Q9HBB8 845 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 RXFP1Q9HBX9 757 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SETD4Q9NVD3 440 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 TUBGCP4Q9UGJ1 667 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KIAA1257Q9ULG3 409 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 PHTF1Q9UMS5 762 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 HEY1Q9Y5J3 304 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 TFE3P19532 575 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 HOXA11P31270 313 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 STIP1P31948 543 aaKnown RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 ELK3P41970 407 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 GCLCP48506 637 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 CCNA1P78396 465 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 RNASELQ05823 741 aaKnown RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 TFDP2Q14188 446 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 SNCBQ16143 134 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PDK4Q16654 411 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PKDCCQ504Y2 493 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 LVRNQ6Q4G3 990 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 USP50Q70EL3 339 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PLD5Q8N7P1 536 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 FAM172AQ8WUF8 416 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 DCAKDQ8WVC6 231 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 C18orf25Q96B23 403 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 DHRS4Q9BTZ2 278 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PHACTR1Q9C0D0 580 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 MIS12Q9H081 205 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PPCSQ9HAB8 311 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 USP29Q9HBJ7 922 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 KCNN4O15554 427 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PAPSS1O43252 624 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 ADCY6O43306 1168 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 MMP3P08254 477 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 MSH2P43246 934 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 GTF2A1P52655 376 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 KCNJ11Q14654 390 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 FAM47CQ5HY64 1035 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 HHATQ5VTY9 493 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 RNF43Q68DV7 783 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PNMA8AQ86V59 439 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 NT5DC4Q86YG4 428 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 AGGF1Q8N302 714 aaeCLIP9.33□□□□□ -0.92
SYNE1-217ENST00000466159 KIF2BQ8N4N8 673 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 PQLC3Q8N755 202 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 MZB1Q8WU39 189 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 SLC35F5Q8WV83 523 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 GRAMD1AQ96CP6 724 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 FAF2Q96CS3 445 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 MAGEB5Q9BZ81 275 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 DPEP3Q9H4B8 488 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 ZNF408Q9H9D4 720 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 GJD2Q9UKL4 321 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 TRIM33Q9UPN9 1127 aa9.33□□□□□ -0.92
SYNE1-217ENST00000466159 WDR91A4D1P6 747 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 BTBD19C9JJ37 291 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 KBTBD13C9JR72 458 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 CHUKO15111 745 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ECM2O94769 699 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 ADRA1DP25100 572 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 RBL1P28749 1068 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SDC4P31431 198 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 YARSP54577 528 aaKnown RBP9.32□□□□□ -0.92
SYNE1-217ENST00000466159 SLC6A3Q01959 620 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 KLHL38Q2WGJ6 581 aa9.32□□□□□ -0.92
SYNE1-217ENST00000466159 BOLA3Q53S33 107 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms