RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 CYP1A1P04798 512 aaPredicted RBP7.99□□□□□ -1.13
USP54-210ENST00000466048 CA4P22748 312 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 RAD23BP54727 409 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 TEDDM1Q5T9Z0 273 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 NAA35Q5VZE5 725 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 LMBRD2Q68DH5 695 aaPredicted RBP7.99□□□□□ -1.13
USP54-210ENST00000466048 LRRC8DQ7L1W4 858 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 PALM2Q8IXS6 379 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 ARHGEF26Q96DR7 871 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 MS4A14Q96JA4 679 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 MRPL40Q9NQ50 206 aaKnown RBP7.99□□□□□ -1.13
USP54-210ENST00000466048 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP54-210ENST00000466048 DPP3Q9NY33 737 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 UXTQ9UBK9 157 aaPredicted RBP7.99□□□□□ -1.13
USP54-210ENST00000466048 ANAPC7Q9UJX3 599 aa7.99□□□□□ -1.13
USP54-210ENST00000466048 VNN1O95497 513 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 SLC2A3P11169 496 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 COMTP21964 271 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 IGFBP4P22692 258 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ADCY8P40145 1251 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 NEK2P51955 445 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 LBX1P52954 281 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 EPHB3P54753 998 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 GJA9P57773 515 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ZNF473Q8WTR7 871 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 MRPS31Q92665 395 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 THOC1Q96FV9 657 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 HPDLQ96IR7 371 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 HIC2Q96JB3 615 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ADAM2Q99965 735 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 MTMR12Q9C0I1 747 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 C10orf88Q9H8K7 445 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PTPRHQ9HD43 1115 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 OSGEPQ9NPF4 335 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ATP8A1Q9Y2Q0 1164 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PCDHA3Q9Y5H8 950 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 DOCK5Q9H7D0 1870 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ZNF236Q9UL36 1845 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ZBTB42B2RXF5 422 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 GYG2O15488 501 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PHF2O75151 1096 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 SNAI1O95863 264 aaPredicted RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 TUFMP49411 452 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 TMED10P49755 219 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 IRAK1P51617 712 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 KPNA1P52294 538 aaPredicted RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 HTRA3P83110 453 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 SPARCL1Q14515 664 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 RHOT1Q8IXI2 618 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 LRRC43Q8N309 656 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 AENQ8WTP8 325 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 PCDHB18PQ96TA0 734 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 TTC1Q99614 292 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PITPNM3Q9BZ71 974 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 IPO11Q9UI26 975 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 HPCAL4Q9UM19 191 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PRG3Q9Y2Y8 225 aaPredicted RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 SQORQ9Y6N5 450 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ARHGEF9O43307 516 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 STAU1O95793 577 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 CLTBP09497 229 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ACADSP16219 412 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 SMPD1P17405 629 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 GRM5P41594 1212 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 MRPS25P82663 173 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 DR1Q01658 176 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 PTP4A2Q12974 167 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 MKRN4PQ13434 485 aaPredicted RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 TFDP2Q14188 446 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 RBM41Q96IZ5 413 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 LRGUKQ96M69 825 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 CCT8L2Q96SF2 557 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ARHGAP39Q9C0H5 1083 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 RNPEPQ9H4A4 650 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 TBC1D23Q9NUY8 699 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 DDX56Q9NY93 547 aaKnown RBP7.98□□□□□ -1.13
USP54-210ENST00000466048 TAS2R14Q9NYV8 317 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 TMEM59LQ9UK28 342 aa7.98□□□□□ -1.13
USP54-210ENST00000466048 ABHD14A-ACY1A0A1B0GW23 586 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 DDX3YO15523 660 aaKnown RBP7.97□□□□□ -1.13
USP54-210ENST00000466048 FGF19O95750 216 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 FAM107AO95990 144 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 PYGBP11216 843 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 KRT3P12035 628 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 MX2P20592 715 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 SDC4P31431 198 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 GRIK1P39086 918 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 AARSP49588 968 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP54-210ENST00000466048 C16orf87Q6PH81 154 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 MFN1Q8IWA4 741 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 FBXO22Q8NEZ5 403 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 DDX1Q92499 740 aaKnown RBP7.97□□□□□ -1.13
USP54-210ENST00000466048 MAGOHBQ96A72 148 aaKnown RBP7.97□□□□□ -1.13
USP54-210ENST00000466048 FAM167BQ9BTA0 163 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 SLC28A3Q9HAS3 691 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 NDE1Q9NXR1 346 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 IL1RAPL1Q9NZN1 696 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 PCDHGC3Q9UN70 934 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 PTCH2Q9Y6C5 1203 aa7.97□□□□□ -1.13
USP54-210ENST00000466048 HSPA8P11142 646 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms