RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 HBP1O60381 514 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 EPHB2P29323 1055 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 ACBD5Q5T8D3 534 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 TRIM69Q86WT6 500 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 MMTAG2Q9BU76 263 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 SYNDIG1LA6NDD5 238 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 TNFAIP8O95379 198 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 KRT75O95678 551 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 UBE3AQ05086 875 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 OASLQ15646 514 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 TTC23LQ6PF05 361 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 OPTNQ96CV9 577 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 SGF29Q96ES7 293 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF184Q99676 751 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 C17orf80Q9BSJ5 609 aa19.64■□□□□ 0.73
CCDC88B-204ENST00000463837 NCANO14594 1321 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 MPOP05164 745 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 CPB1P15086 417 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 CCDC153Q494R4 210 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 MIIPQ5JXC2 388 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 DENND1BQ6P3S1 775 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 WDR49Q8IV35 697 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 CHST13Q8NET6 341 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC5A5Q92911 643 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 VPS50Q96JG6 964 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SORCS3Q9UPU3 1222 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 AAR2Q9Y312 384 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 KIDINS220Q9ULH0 1771 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 UNC5CO95185 931 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 DCAF6Q58WW2 860 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 IYDQ6PHW0 289 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 ADGRA1Q86SQ6 560 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 USP18Q9UMW8 372 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 FAM32AQ9Y421 112 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 PREX1Q8TCU6 1659 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SOAT2O75908 522 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 ILF2Q12905 390 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 PTK2BQ14289 1009 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 DENND5BQ6ZUT9 1274 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 IPMKQ8NFU5 416 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC7A14Q8TBB6 771 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 MIEF2Q96C03 454 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 RTFDC1Q9BY42 306 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 FAM49BQ9NUQ9 324 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC38A7Q9NVC3 462 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 KCNK4Q9NYG8 393 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SPATA31A1Q5TZJ5 1347 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 HIST1H2AGP0C0S8 130 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 HIST1H2ADP20671 130 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 PBX1P40424 430 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 NAB1Q13506 487 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 KIZQ2M2Z5 673 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 ACTL9Q8TC94 416 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 HIST1H2AHQ96KK5 128 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 HIST1H2AJQ99878 128 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 H2AFJQ9BTM1 129 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 DNAJC18Q9H819 358 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 ZFYVE28Q9HCC9 887 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 SNX13Q9Y5W8 968 aa19.63■□□□□ 0.73
CCDC88B-204ENST00000463837 ABHD2P08910 425 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 RPS12P25398 132 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 CACNB2Q08289 660 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 MGAT5Q09328 741 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 SPATA2LQ8IUW3 424 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 STX19Q8N4C7 294 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 VTI1BQ9UEU0 232 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 PIN4Q9Y237 131 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 SAC3D1A6NKF1 404 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 PDGFRBP09619 1106 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 DRD4P21917 467 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 RGS4P49798 205 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 SPDYAQ5MJ70 313 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 CD274Q9NZQ7 290 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 MOSPD1Q9UJG1 213 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 RRP1BQ14684 758 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 P3H2Q8IVL5 708 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 DEFB107AQ8IZN7 70 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 GDPD5Q8WTR4 605 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 TMEM237Q96Q45 408 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 CYP3A43Q9HB55 503 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC25A27O95847 323 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 RARBP10826 455 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 ATP6V1E1P36543 226 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 SV2AQ7L0J3 742 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 ARHGAP22Q7Z5H3 698 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 TDRD5Q8NAT2 981 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 LINC00116Q8NCU8 138 aa19.62■□□□□ 0.73
CCDC88B-204ENST00000463837 PECAM1P16284 738 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 DCAF4L1Q3SXM0 396 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 HORMAD1Q86X24 394 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MICU2Q8IYU8 434 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 AGBL1Q96MI9 1066 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 NRDE2Q9H7Z3 1164 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MPP6Q9NZW5 540 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 KBTBD13C9JR72 458 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 PSMG1O95456 288 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 SMIM5Q71RC9 77 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 KATNAL2Q8IYT4 538 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 EPS8L2Q9H6S3 715 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms