RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PHBP35232 272 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 RFC1P35251 1148 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-208ENST00000463007 RPL22P35268 128 aaKnown RBP12.97□□□□□ -0.33
HDAC4-208ENST00000463007 LMNB2Q03252 620 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 SLC34A1Q06495 639 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ZNF252P-AS1Q0IIN9 211 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 UBAP2LQ14157 1087 aaKnown RBP12.97□□□□□ -0.33
HDAC4-208ENST00000463007 STXBP2Q15833 593 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 CTC1Q2NKJ3 1217 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 WASHC2DQ5SRD0 308 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 GPAT2Q6NUI2 795 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ZNF677Q86XU0 584 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 GPC2Q8N158 579 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ATP11CQ8NB49 1132 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 NETO2Q8NC67 525 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 CPT1BQ92523 772 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 MMP19Q99542 508 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ACTL7BQ9Y614 415 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 LOC100653049A0A140TA62 436 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 TRIM49D1C9J1S8 452 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 SOCS7O14512 581 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ABLIM1O14639 778 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ALOX15BO15296 676 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 CNMDO75829 334 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 KRT34O76011 436 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 TMEM132AQ24JP5 1023 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 TFDP3Q5H9I0 405 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 FOXB2Q5VYV0 432 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 FAM43BQ6ZT52 329 aaPredicted RBP12.97□□□□□ -0.33
HDAC4-208ENST00000463007 PRPF39Q86UA1 669 aaKnown RBP12.97□□□□□ -0.33
HDAC4-208ENST00000463007 TREML1Q86YW5 311 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 RCOR2Q8IZ40 523 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 FAM81BQ96LP2 452 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 MSTO1Q9BUK6 570 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ZNF302Q9NR11 478 aa12.97□□□□□ -0.33
HDAC4-208ENST00000463007 ZBTB42B2RXF5 422 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 IRF6O14896 467 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 WFS1O76024 890 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 ZWINTO95229 277 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 F7P08709 466 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 GMPRP36959 345 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RAP1GAPP47736 663 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 TFAMQ00059 246 aaKnown RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 PTP4A2Q12974 167 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 MORF4L2Q15014 288 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 MROH9Q5TGP6 573 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 KCTD6Q8NC69 237 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 OXNAD1Q96HP4 312 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RBM41Q96IZ5 413 aaKnown RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 PPP1R36Q96LQ0 422 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 R3HDMLQ9H3Y0 253 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 TMEM134Q9H6X4 195 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 IRAK4Q9NWZ3 460 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 FBXO40Q9UH90 709 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 IP6K2Q9UHH9 426 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 MAGED2Q9UNF1 606 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 NR2E3Q9Y5X4 410 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 CCDC160A6NGH7 325 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 COPEO14579 308 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 TOM1L1O75674 476 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 ZMPSTE24O75844 475 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 PDE5AO76074 875 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 TNFSF9P41273 254 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 ZNF132P52740 706 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 CHI3L2Q15782 390 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RAB6CQ53S08 254 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 SCYL2Q6P3W7 929 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RIBC1Q8N443 379 aaPredicted RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RBM15BQ8NDT2 890 aaKnown RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 NLGN2Q8NFZ4 835 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 JOSD2Q8TAC2 188 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 WDR83Q9BRX9 315 aaKnown RBP12.96□□□□□ -0.33
HDAC4-208ENST00000463007 APOL6Q9BWW8 343 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 RAB6CQ9H0N0 254 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 ACSS2Q9NR19 701 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 PCMTD2Q9NV79 361 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 LRCH1Q9Y2L9 728 aa12.96□□□□□ -0.33
HDAC4-208ENST00000463007 TTLL13PA6NNM8 815 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 H7C0C1 242 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 RBP3P10745 1247 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 ACADSP16219 412 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 ATP5OP48047 213 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 AQP5P55064 265 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 SLC25A3Q00325 362 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 NCOA4Q13772 614 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 CAPSQ13938 189 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 DARS2Q6PI48 645 aaKnown RBP12.95□□□□□ -0.34
HDAC4-208ENST00000463007 RSPH3Q86UC2 560 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 SH3TC2Q8TF17 1288 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 TRIM11Q96F44 468 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 PPP1R16BQ96T49 567 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 IMPG2Q9BZV3 1241 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 hCG_1818297A0A087WSY0 165 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 DCAF8L1A6NGE4 600 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 MAGEB2O15479 319 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 IL1R2P27930 398 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 BPIFB4P59827 614 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 EIF3EP60228 445 aaKnown RBP12.95□□□□□ -0.34
HDAC4-208ENST00000463007 RGS9BPQ6ZS82 235 aa12.95□□□□□ -0.34
HDAC4-208ENST00000463007 EGFL6Q8IUX8 553 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms