RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ZNF516Q92618 1163 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 SMARCD1Q96GM5 515 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 BACH2Q9BYV9 841 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 DNAI2Q9GZS0 605 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 XYLT2Q9H1B5 865 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 SMYD3Q9H7B4 428 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 VRTNQ9H8Y1 702 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 RXFP3Q9NSD7 469 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 COMMD8Q9NX08 183 aa16.33■□□□□ 0.2
SKA3-204ENST00000462482 CHORDC1Q9UHD1 332 aaPredicted RBP16.33■□□□□ 0.2
SKA3-204ENST00000462482 ZBTB24O43167 697 aaPredicted RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 TNFRSF4P43489 277 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 DHPSP49366 369 aaPredicted RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 CACNA2D1P54289 1103 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 CDH8P55286 799 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 KDSRQ06136 332 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TCHHQ07283 1943 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 CUL4BQ13620 913 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 SGSM1Q2NKQ1 1148 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 N4BP2L1Q5TBK1 243 aaPredicted RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 RESP18Q5W5W9 173 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 PMS2CLQ68D20 193 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TCEAL6Q6IPX3 200 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 RHBDF2Q6PJF5 856 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TRMT11Q7Z4G4 463 aaKnown RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 RASSF3Q86WH2 238 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 PGBD3Q8N328 593 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 ALLCQ8N6M5 410 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TXNDC5Q8NBS9 432 aaKnown RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 PARD3BQ8TEW8 1205 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 WHAMMQ8TF30 809 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TCEAL3Q969E4 200 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 LSM14BQ9BX40 385 aaKnown RBP16.32■□□□□ 0.2
SKA3-204ENST00000462482 PCDHA7Q9UN72 937 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 NME7Q9Y5B8 376 aa16.32■□□□□ 0.2
SKA3-204ENST00000462482 TBC1D3BA6NDS4 549 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 TM4SF5O14894 197 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 COCHO43405 550 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 AP1G2O75843 785 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 KIF20AO95235 890 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 KCNK5O95279 499 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 F13A1P00488 732 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 RPN1P04843 607 aaKnown RBP16.31■□□□□ 0.2
SKA3-204ENST00000462482 SLC6A11P48066 632 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 CASP4P49662 377 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 TUBP50607 506 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 SLC5A3P53794 718 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 GOLGA8FQ08AF8 430 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 GOLGA8DPQ0D2H9 430 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 LY6G5CQ5SRR4 150 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 LPCAT2Q7L5N7 544 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 MDGA1Q8NFP4 955 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 TAF4BQ92750 862 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 SNX21Q969T3 373 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 CCDC47Q96A33 483 aaKnown RBP16.31■□□□□ 0.2
SKA3-204ENST00000462482 KCNK16Q96T55 309 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 IMPG2Q9BZV3 1241 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 FBXO44Q9H4M3 255 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 KRT82Q9NSB4 513 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 DEC1Q9P2X7 70 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 FRMD4BQ9Y2L6 1034 aa16.31■□□□□ 0.2
SKA3-204ENST00000462482 LRRIQ3A6PVS8 624 aaPredicted RBP16.3■□□□□ 0.2
SKA3-204ENST00000462482 C4orf47A7E2U8 309 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 SLFN14P0C7P3 912 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 DPP6P42658 865 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 NOVA1P51513 510 aaKnown RBP16.3■□□□□ 0.2
SKA3-204ENST00000462482 GAB4Q2WGN9 574 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 ANO4Q32M45 955 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 SNX30Q5VWJ9 437 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 ACOT1Q86TX2 421 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 IL17RCQ8NAC3 791 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 SCAMP5Q8TAC9 235 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 KCNV2Q8TDN2 545 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 PIGKQ92643 395 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 TMEM9BQ9NQ34 198 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 TLR8Q9NR97 1041 aaKnown RBP16.3■□□□□ 0.2
SKA3-204ENST00000462482 TMEM30AQ9NV96 361 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 GMIPQ9P107 970 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 SERTAD1Q9UHV2 236 aa16.3■□□□□ 0.2
SKA3-204ENST00000462482 KIF26AQ9ULI4 1882 aaPredicted RBP16.29■□□□□ 0.2
SKA3-204ENST00000462482 C4BPAP04003 597 aaKnown RBP16.29■□□□□ 0.2
SKA3-204ENST00000462482 IRF1P10914 325 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 PMLP29590 882 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 CLDN10P78369 228 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 LMAN2Q12907 356 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 CEP135Q66GS9 1140 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 SDE2Q6IQ49 451 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 PSAPL1Q6NUJ1 521 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 UNC93AQ86WB7 457 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 SLC9A9Q8IVB4 645 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 NAT16Q8N8M0 369 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 HMGB4Q8WW32 186 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 GZF1Q9H116 711 aaPredicted RBP16.29■□□□□ 0.2
SKA3-204ENST00000462482 CCSER2Q9H7U1 834 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 USP25Q9UHP3 1055 aa16.29■□□□□ 0.2
SKA3-204ENST00000462482 LSM7Q9UK45 103 aaKnown RBP16.29■□□□□ 0.2
SKA3-204ENST00000462482 SPTBN2O15020 2390 aa16.28■□□□□ 0.2
SKA3-204ENST00000462482 A0A0A0MRY4 1105 aa16.28■□□□□ 0.2
SKA3-204ENST00000462482 TCRBV21S2A2A0A5A6 115 aa16.28■□□□□ 0.2
SKA3-204ENST00000462482 SGK1O00141 431 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms