RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RBM23Q86U06 439 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 EXOC8Q8IYI6 725 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 CARFQ8N187 725 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 SMRP1Q8NCR6 262 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 RCBTB1Q8NDN9 531 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MRPS27Q92552 414 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 WASF1Q92558 559 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 TRMT2BQ96GJ1 504 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 ZNF668Q96K58 619 aaPredicted RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 ZNF558Q96NG5 402 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MRPL9Q9BYD2 267 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 KCNMB3Q9NPA1 279 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 NGRNQ9NPE2 291 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 ST7Q9NRC1 585 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MUTYHQ9UIF7 546 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 TPCN1Q9ULQ1 816 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 TECTAO75443 2155 aa8.09□□□□□ -1.11
USP54-208ENST00000461520 MYH9P35579 1960 aaKnown RBP8.09□□□□□ -1.11
USP54-208ENST00000461520 A0A087WZ62 844 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 TMEM150BA6NC51 233 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 PRICKLE3O43900 615 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 CCNT1O60563 726 aaKnown RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 EIF5BO60841 1220 aaKnown RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 GLP2RO95838 553 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 SRGAP2BP0DMP2 458 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 LCP1P13796 627 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 FGFR4P22455 802 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 QARSP47897 775 aaKnown RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 DUSP6Q16828 381 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 SKOR2Q2VWA4 1001 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 CLLU1OSQ5K130 101 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 TMEM184AQ6ZMB5 413 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 RHPN2Q8IUC4 686 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 CELF2-AS1Q8N7Q2 184 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 TMEM145Q8NBT3 493 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 HNRNPLLQ8WVV9 542 aaKnown RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 SEC14L1Q92503 715 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 HAS1Q92839 578 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 GORASP1Q9BQQ3 440 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 SH2D3AQ9BRG2 576 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 FDXACB1Q9BRP7 624 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 KCNH6Q9H252 994 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 SPG21Q9NZD8 308 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 SUCLA2Q9P2R7 463 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 BARX2Q9UMQ3 279 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 FNDC1Q4ZHG4 1894 aaPredicted RBP8.08□□□□□ -1.12
USP54-208ENST00000461520 EVPLQ92817 2033 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 TRIOO75962 3097 aa8.08□□□□□ -1.12
USP54-208ENST00000461520 PER2O15055 1255 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 MARCH6O60337 910 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 CSDE1O75534 798 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 BAG4O95429 457 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 CTDNEP1O95476 244 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 CPP00450 1065 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 ATF7P17544 494 aaPredicted RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 GRIA2P42262 883 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 ALDH7A1P49419 539 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 RAB27AP51159 221 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 AK2P54819 239 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 GFRA1P56159 465 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 KCNC3Q14003 757 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 BMS1Q14692 1282 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 EPHA7Q15375 998 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 HERC4Q5GLZ8 1057 aaPredicted RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 PLPP4Q5VZY2 271 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 ERICH6BQ5W0A0 696 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 PLA2G4FQ68DD2 849 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 TWF2Q6IBS0 349 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 CD300LDQ6UXZ3 194 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 ETV3LQ6ZN32 361 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 PIK3AP1Q6ZUJ8 805 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 OTUD6AQ7L8S5 288 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 MILR1Q7Z6M3 343 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 STK32CQ86UX6 486 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 PPIL6Q8IXY8 311 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 C4orf19Q8IY42 314 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 SLC39A11Q8N1S5 342 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 RNF169Q8NCN4 708 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 TMEM169Q96HH4 297 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 CEP170P1Q96L14 293 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 CCDC140Q96MF4 163 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 NLRP4Q96MN2 994 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 TCF25Q9BQ70 676 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 PHF7Q9BWX1 381 aaPredicted RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 KRTAP4-2Q9BYR5 136 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 DHX33Q9H6R0 707 aaKnown RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 ENTPD7Q9NQZ7 604 aa8.07□□□□□ -1.12
USP54-208ENST00000461520 ORC3Q9UBD5 711 aaPredicted RBP8.07□□□□□ -1.12
USP54-208ENST00000461520 PLXNA4Q9HCM2 1894 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 LOC730098B7Z3J9 87 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 ZNF623O75123 536 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 FDPSP14324 419 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 HOXB8P17481 243 aaPredicted RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 YWHABP31946 246 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 KRT2P35908 639 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 PBX3P40426 434 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 POLGP54098 1239 aaPredicted RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 NPEPPSP55786 919 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 BCAR1P56945 870 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 KCNAB2Q13303 367 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms