RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 GJA4P35212 333 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 GRSF1Q12849 480 aaKnown RBP eCLIP22.46■■□□□ 1.19
HMGB3-205ENST00000455596 NR1H3Q13133 447 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 ZNF394Q53GI3 561 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 TMEM196Q5HYL7 178 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 SNX30Q5VWJ9 437 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 KLHL10Q6JEL2 608 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 Q6ZS52 159 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 KIAA1958Q8N8K9 716 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 CHFRQ96EP1 664 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 SMPD4Q9NXE4 827 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 COQ4Q9Y3A0 265 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 MYOFQ9NZM1 2061 aa22.46■■□□□ 1.19
HMGB3-205ENST00000455596 NFATC1O95644 943 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 NRLP54845 237 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 SATB1Q01826 763 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 MORC3Q14149 939 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 HECTD3Q5T447 861 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 CLEC20AQ6ZU45 233 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 FILIP1Q7Z7B0 1213 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 DDX42Q86XP3 938 aaKnown RBP eCLIP22.45■■□□□ 1.18
HMGB3-205ENST00000455596 ZBTB44Q8NCP5 570 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 TATDN2Q93075 761 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 SLC35C1Q96A29 364 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 FAM124BQ9H5Z6 455 aaPredicted RBP22.45■■□□□ 1.18
HMGB3-205ENST00000455596 CISHQ9NSE2 258 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 GMIPQ9P107 970 aa22.45■■□□□ 1.18
HMGB3-205ENST00000455596 BICDL2A1A5D9 508 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 PPP1R3GB7ZBB8 358 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 BIN1O00499 593 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 ZDHHC11BP0C7U3 371 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 TDGF1P13385 188 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 BMP6P22004 513 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 TUBP50607 506 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 UBE2HP62256 183 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 CCDC40Q4G0X9 1142 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 FSTL4Q6MZW2 842 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 NELFBQ8WX92 580 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 HEXIM2Q96MH2 286 aaKnown RBP22.44■■□□□ 1.18
HMGB3-205ENST00000455596 LINC00597Q9H2U6 94 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 PNPLA8Q9NP80 782 aa22.44■■□□□ 1.18
HMGB3-205ENST00000455596 TLR8Q9NR97 1041 aaKnown RBP22.44■■□□□ 1.18
HMGB3-205ENST00000455596 SLC9A3R1O14745 358 aaPredicted RBP22.43■■□□□ 1.18
HMGB3-205ENST00000455596 COCHO43405 550 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 LILRB5O75023 590 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 GALK1P51570 392 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 PPP1R26Q5T8A7 1209 aaPredicted RBP22.43■■□□□ 1.18
HMGB3-205ENST00000455596 TTI2Q6NXR4 508 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 FOXR2Q6PJQ5 311 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 JAKMIP2Q96AA8 810 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 TMEM176AQ96HP8 235 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 ARID3AQ99856 593 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 DUSP9Q99956 384 aaKnown RBP22.43■■□□□ 1.18
HMGB3-205ENST00000455596 P2RY13Q9BPV8 354 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 CCSER2Q9H7U1 834 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 CFAP97Q9P2B7 532 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 CTNND2Q9UQB3 1225 aa22.43■■□□□ 1.18
HMGB3-205ENST00000455596 HHLA1C9JL84 531 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 PAPSS2O95340 614 aaPredicted RBP22.42■■□□□ 1.18
HMGB3-205ENST00000455596 DRD1P21728 446 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 GPRIN1Q7Z2K8 1008 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 CD101Q93033 1021 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 DUSP16Q9BY84 665 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 NACA2Q9H009 215 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 SCML2Q9UQR0 700 aa22.42■■□□□ 1.18
HMGB3-205ENST00000455596 EGFP01133 1207 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 ACO1P21399 889 aaKnown RBP22.41■■□□□ 1.18
HMGB3-205ENST00000455596 FMO5P49326 533 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 RAD23BP54727 409 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 YWHAEP62258 255 aaKnown RBP22.41■■□□□ 1.18
HMGB3-205ENST00000455596 CUL2Q13617 745 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 TRIML1Q8N9V2 468 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 SUMF1Q8NBK3 374 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 SLC4A11Q8NBS3 891 aa22.41■■□□□ 1.18
HMGB3-205ENST00000455596 FBRSL1Q9HCM7 1045 aaKnown RBP22.41■■□□□ 1.18
HMGB3-205ENST00000455596 ZFHX2Q9C0A1 2572 aaPredicted RBP22.4■■□□□ 1.18
HMGB3-205ENST00000455596 USP34Q70CQ2 3546 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 E2F8A0AVK6 867 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 PAK1Q13153 545 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 FBXO43Q4G163 708 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 NAIF1Q69YI7 327 aaPredicted RBP22.4■■□□□ 1.18
HMGB3-205ENST00000455596 ADGRG2Q8IZP9 1017 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 ZFRQ96KR1 1074 aaKnown RBP22.4■■□□□ 1.18
HMGB3-205ENST00000455596 TBC1D14Q9P2M4 693 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 SH3BP1Q9Y3L3 701 aa22.4■■□□□ 1.18
HMGB3-205ENST00000455596 K7ESF4 209 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 PMM2O15305 246 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 TLR5O60602 858 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 ATG13O75143 517 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 CYP17A1P05093 508 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 TBXAS1P24557 533 aaPredicted RBP22.39■■□□□ 1.17
HMGB3-205ENST00000455596 ANP32AP39687 249 aaKnown RBP22.39■■□□□ 1.17
HMGB3-205ENST00000455596 STX17P56962 302 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 ARHGAP17Q68EM7 881 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 HINFPQ9BQA5 517 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 EPC1Q9H2F5 836 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 KIAA1468Q9P260 1216 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 MYO15AQ9UKN7 3530 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 EML5Q05BV3 1969 aa22.39■■□□□ 1.17
HMGB3-205ENST00000455596 SCAMP3O14828 347 aaKnown RBP22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms