RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 WHAMMQ8TF30 809 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 ATRIPQ8WXE1 791 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 SEMA4DQ92854 862 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 EEF2KMTQ96G04 330 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 NT5C1AQ9BXI3 368 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 EPC1Q9H2F5 836 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 MMRN2Q9H8L6 949 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 PNPLA8Q9NP80 782 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 FAM49BQ9NUQ9 324 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 COQ4Q9Y3A0 265 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 CPQQ9Y646 472 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 WNT6Q9Y6F9 365 aa12.76□□□□□ -0.37
USP40-210ENST00000454354 MYO18AQ92614 2054 aaKnown RBP12.76□□□□□ -0.37
USP40-210ENST00000454354 TRIM49BA6NDI0 452 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 K7ESF4 209 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 BEST1O76090 585 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 NFATC1O95644 943 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 FAM200BP0CF97 657 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 HOXA6P31267 233 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 PPP1R2P41236 205 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 GRSF1Q12849 480 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP40-210ENST00000454354 IFRD2Q12894 506 aaPredicted RBP12.75□□□□□ -0.37
USP40-210ENST00000454354 CLEC20AQ6ZU45 233 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 DDX42Q86XP3 938 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP40-210ENST00000454354 EXOC4Q96A65 974 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 ZFRQ96KR1 1074 aaKnown RBP12.75□□□□□ -0.37
USP40-210ENST00000454354 DUSP9Q99956 384 aaKnown RBP12.75□□□□□ -0.37
USP40-210ENST00000454354 P2RY13Q9BPV8 354 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 FBXO44Q9H4M3 255 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP40-210ENST00000454354 RAB20Q9NX57 234 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 DNAH14Q0VDD8 3507 aa12.75□□□□□ -0.37
USP40-210ENST00000454354 HHLA1C9JL84 531 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 PSMA7O14818 248 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 GADD45BO75293 160 aaPredicted RBP12.74□□□□□ -0.37
USP40-210ENST00000454354 CD44P16070 742 aaKnown RBP12.74□□□□□ -0.37
USP40-210ENST00000454354 CD58P19256 250 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 DRD1P21728 446 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 ADORA2BP29275 332 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 MAP3K7CLP57077 242 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 STIM1Q13586 685 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 CBWD6Q4V339 395 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 CBWD3Q5JTY5 395 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 CBWD5Q5RIA9 395 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 HECTD3Q5T447 861 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 RUBCNQ92622 972 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 SLC35C1Q96A29 364 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 CYFIP2Q96F07 1278 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 DHTKD1Q96HY7 919 aaPredicted RBP12.74□□□□□ -0.37
USP40-210ENST00000454354 CEP63Q96MT8 703 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 DNAI2Q9GZS0 605 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 LINC00597Q9H2U6 94 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 C2orf42Q9NWW7 574 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 GMIPQ9P107 970 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 MAN1B1Q9UKM7 699 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 PLXND1Q9Y4D7 1925 aa12.74□□□□□ -0.37
USP40-210ENST00000454354 CHURC1-FNTBB4DL54 471 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 SLC9A3R1O14745 358 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 PMM2O15305 246 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 COCHO43405 550 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 ABL1P00519 1130 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 EGFP01133 1207 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 CYP17A1P05093 508 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 MBL2P11226 248 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 BMP6P22004 513 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 GALK1P51570 392 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 NR1H3Q13133 447 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 MORC3Q14149 939 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 GAB4Q2WGN9 574 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 FBXO43Q4G163 708 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 DCAF17Q5H9S7 520 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 TCERG1LQ5VWI1 586 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 NAIF1Q69YI7 327 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 PKN3Q6P5Z2 889 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 GPRIN1Q7Z2K8 1008 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 FILIP1Q7Z7B0 1213 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 TTC16Q8NEE8 873 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 EZH1Q92800 747 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 CD101Q93033 1021 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 ARID3AQ99856 593 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 CCSER2Q9H7U1 834 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 METTL14Q9HCE5 456 aaKnown RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 FBRSL1Q9HCM7 1045 aaKnown RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 CISHQ9NSE2 258 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 SMPD4Q9NXE4 827 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 CFAP97Q9P2B7 532 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 ARMCX3Q9UH62 379 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 CHORDC1Q9UHD1 332 aaPredicted RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 SMG5Q9UPR3 1016 aaKnown RBP12.73□□□□□ -0.37
USP40-210ENST00000454354 SCML2Q9UQR0 700 aa12.73□□□□□ -0.37
USP40-210ENST00000454354 E2F8A0AVK6 867 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 ATG13O75143 517 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 RNF40O75150 1001 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 OPRD1P41143 372 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 RAD23BP54727 409 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 PPP1R26Q5T8A7 1209 aaPredicted RBP12.72□□□□□ -0.37
USP40-210ENST00000454354 TTI2Q6NXR4 508 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 LONP2Q86WA8 852 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 ADGRG2Q8IZP9 1017 aa12.72□□□□□ -0.37
USP40-210ENST00000454354 SLC4A11Q8NBS3 891 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms