RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	SH3RF2	Q8TEC5	729 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	JAKMIP2	Q96AA8	810 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	MSANTD3	Q96H12	275 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	SPATA17	Q96L03	361 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM83C	Q9BQN1	747 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	SLC6A16	Q9GZN6	736 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	PRMT8	Q9NR22	394 aa	Predicted RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	KRT82	Q9NSB4	513 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM49B	Q9NUQ9	324 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	C2orf42	Q9NWW7	574 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ZSCAN32	Q9NX65	697 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	DUS2	Q9NX74	493 aa	Known RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	GMPR2	Q9P2T1	348 aa	Known RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	NCDN	Q9UBB6	729 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	DCHS1	Q96JQ0	3298 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ATP8B3	O60423	1300 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	CHURC1-FNTB	B4DL54	471 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	MBL2	P11226	248 aa	Predicted RBP	9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	P4HA1	P13674	534 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CD58	P19256	250 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	ADORA2B	P29275	332 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CXCL12	P48061	93 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	FNTB	P49356	437 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CCR3	P51677	355 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	NDST1	P52848	882 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	NOP14	P78316	857 aa	Known RBP	9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CLDN10	P78369	228 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	PPP3CA	Q08209	521 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	DMWD	Q09019	674 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	USP4	Q13107	963 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	ADAM9	Q13443	819 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	ZNF268	Q14587	947 aa	Predicted RBP	9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	PPP2R5D	Q14738	602 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	DGKK	Q5KSL6	1271 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	PKN3	Q6P5Z2	889 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	C1orf228	Q6PIY5	440 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	NUP93	Q8N1F7	819 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	GUF1	Q8N442	669 aa	Known RBP	9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CPA6	Q8N4T0	437 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	SUMF1	Q8NBK3	374 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	SLC2A14	Q8TDB8	520 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	TAS1R2	Q8TE23	839 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	FBXO32	Q969P5	355 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CHFR	Q96EP1	664 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CCDC34	Q96HJ3	373 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	TNIP3	Q96KP6	325 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	C8orf48	Q96LL4	319 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	SLITRK1	Q96PX8	696 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	KCNK16	Q96T55	309 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	IMPG2	Q9BZV3	1241 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	SEMA4A	Q9H3S1	761 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	TOR4A	Q9NXH8	423 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	EHD2	Q9NZN4	543 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	GCNT4	Q9P109	453 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	SMG5	Q9UPR3	1016 aa	Known RBP	9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	TRAF3IP3	Q9Y228	551 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	PCDHGA2	Q9Y5H1	932 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	CEP250	Q9BV73	2442 aa		9.21	□□□□□ -0.94
RFX3-209	ENST00000451859	ZNF840P	A6NDX5	716 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	LEFTY2	O00292	366 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	AP1G2	O75843	785 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ASS1	P00966	412 aa	Known RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	EGF	P01133	1207 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	RPL13	P26373	211 aa	Known RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	GJA4	P35212	333 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	PSMC2	P35998	433 aa	Known RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	PRCP	P42785	496 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ASPA	P45381	313 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	PXN	P49023	591 aa	Predicted RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	MLLT6	P55198	1093 aa	Predicted RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	NUCB2	P80303	420 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	GRSF1	Q12849	480 aa	Known RBP eCLIP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	FOXC1	Q12948	553 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	SRSF5	Q13243	272 aa	Known RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	CCIN	Q13939	588 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	PDGFRL	Q15198	375 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	EML3	Q32P44	896 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	DCAF17	Q5H9S7	520 aa	Predicted RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ISM2	Q6H9L7	571 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	FSTL4	Q6MZW2	842 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	PAQR9	Q6ZVX9	377 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	INTS8	Q75QN2	995 aa	Known RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	FUK	Q8N0W3	1084 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	FMR1NB	Q8N0W7	255 aa	Predicted RBP	9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	SPEM1	Q8N4L4	309 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	C12orf29	Q8N999	325 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ZBTB44	Q8NCP5	570 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	CCDC150	Q8NCX0	1101 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	SCAMP5	Q8TAC9	235 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	OSCP1	Q8WVF1	389 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	RUBCN	Q92622	972 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ATP2A3	Q93084	1043 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	SMARCD1	Q96GM5	515 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	TWNK	Q96RR1	684 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	P2RY13	Q9BPV8	354 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	IER2	Q9BTL4	223 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	TTLL2	Q9BWV7	592 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	RNF38	Q9H0F5	515 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	LINC00597	Q9H2U6	94 aa		9.2	□□□□□ -0.94
RFX3-209	ENST00000451859	ECT2	Q9H8V3	914 aa		9.2	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms