RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 B3GNT5Q9BYG0 378 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 FAM13BQ9NYF5 915 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 DEC1Q9P2X7 70 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 RALYQ9UKM9 306 aaKnown RBP14.12□□□□□ -0.15
HMGB3-204ENST00000448905 UBE4BO95155 1302 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 KMT2BQ9UMN6 2715 aaPredicted RBP14.12□□□□□ -0.15
HMGB3-204ENST00000448905 LNP1A1A4G5 178 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 TNFRSF10BO14763 440 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 YEATS4O95619 227 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 CSRP1P21291 193 aaKnown RBP14.11□□□□□ -0.15
HMGB3-204ENST00000448905 E2F4Q16254 413 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 KNOP1Q1ED39 458 aaKnown RBP14.11□□□□□ -0.15
HMGB3-204ENST00000448905 ZNF667Q5HYK9 610 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 IL17RCQ8NAC3 791 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 MDGA1Q8NFP4 955 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 OLIG1Q8TAK6 271 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 ZNF518BQ9C0D4 1074 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 DNAI2Q9GZS0 605 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 SLC32A1Q9H598 525 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 FOXD4L1Q9NU39 408 aa14.11□□□□□ -0.15
HMGB3-204ENST00000448905 SDK1Q7Z5N4 2213 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 CLDN5O00501 218 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 POLR2DO15514 142 aaKnown RBP14.1□□□□□ -0.15
HMGB3-204ENST00000448905 COCHO43405 550 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 RDXP35241 583 aaKnown RBP14.1□□□□□ -0.15
HMGB3-204ENST00000448905 P2RY2P41231 377 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 TUBP50607 506 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 ATXN3P54252 364 aaPredicted RBP14.1□□□□□ -0.15
HMGB3-204ENST00000448905 IRX4P78413 519 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 GOLGA8FQ08AF8 430 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 GOLGA8DPQ0D2H9 430 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SGSM1Q2NKQ1 1148 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 UAP1L1Q3KQV9 507 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 LY6G5CQ5SRR4 150 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SH3PXD2AQ5TCZ1 1133 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SNX30Q5VWJ9 437 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 TMEM92Q6UXU6 159 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SLC36A4Q6YBV0 504 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SYT12Q8IV01 421 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 C12orf56Q8IXR9 622 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 CEP57L1Q8IYX8 460 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 CEP76Q8TAP6 659 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SCFD1Q8WVM8 642 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 ZNF516Q92618 1163 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 KCNK16Q96T55 309 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 DPEP3Q9H4B8 488 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 FBXO44Q9H4M3 255 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 VRTNQ9H8Y1 702 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 SLC39A2Q9NP94 309 aa14.1□□□□□ -0.15
HMGB3-204ENST00000448905 DMAP1Q9NPF5 467 aaPredicted RBP14.1□□□□□ -0.15
HMGB3-204ENST00000448905 EVLQ9UI08 416 aaPredicted RBP14.1□□□□□ -0.15
HMGB3-204ENST00000448905 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 SGK1O00141 431 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 AP5Z1O43299 807 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 RPN1P04843 607 aaKnown RBP14.09□□□□□ -0.15
HMGB3-204ENST00000448905 PROS1P07225 676 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 KIR2DL1P43626 348 aaPredicted RBP14.09□□□□□ -0.15
HMGB3-204ENST00000448905 NCOA4Q13772 614 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 GAB4Q2WGN9 574 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 ANO4Q32M45 955 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 ZNF699Q32M78 642 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 TRIM61Q5EBN2 209 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 EMC10Q5UCC4 262 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 TMEFF1Q8IYR6 380 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 NAT16Q8N8M0 369 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 HMGB4Q8WW32 186 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 RLN3Q8WXF3 142 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 SMARCD1Q96GM5 515 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 XPO6Q96QU8 1125 aaKnown RBP14.09□□□□□ -0.15
HMGB3-204ENST00000448905 DUSP9Q99956 384 aaKnown RBP14.09□□□□□ -0.15
HMGB3-204ENST00000448905 XYLT2Q9H1B5 865 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 SPHK2Q9NRA0 654 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 WDR35Q9P2L0 1181 aa14.09□□□□□ -0.15
HMGB3-204ENST00000448905 TPRP12270 2363 aaKnown RBP14.09□□□□□ -0.15
HMGB3-204ENST00000448905 NUP210Q8TEM1 1887 aaPredicted RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 TCRBV21S2A2A0A5A6 115 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 K7ELQ4 463 aaPredicted RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 CDX4O14627 284 aaPredicted RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 SCAMP3O14828 347 aaKnown RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 HOXC11O43248 304 aaPredicted RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 AP1G2O75843 785 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 BCKDHBP21953 392 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 HOXD12P35452 270 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 ME1P48163 572 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 CACNA2D1P54289 1103 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 CDH8P55286 799 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF252P-AS1Q0IIN9 211 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 BMT2Q1RMZ1 405 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 LYSMD4Q5XG99 296 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 SHC4Q6S5L8 630 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 RABEPKQ7Z6M1 372 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF513Q8N8E2 541 aaPredicted RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 SCAMP5Q8TAC9 235 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 TAF4BQ92750 862 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 BLZF1Q9H2G9 400 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 TLR8Q9NR97 1041 aaKnown RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 IL37Q9NZH6 218 aa14.08□□□□□ -0.16
HMGB3-204ENST00000448905 LSM7Q9UK45 103 aaKnown RBP14.08□□□□□ -0.16
HMGB3-204ENST00000448905 CFAP45Q9UL16 551 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms