RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 LINC00597Q9H2U6 94 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 FBXO44Q9H4M3 255 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 LMAN1LQ9HAT1 526 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 DUS2Q9NX74 493 aaKnown RBP13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 GMIPQ9P107 970 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 WNT6Q9Y6F9 365 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 LEFTY2O00292 366 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 COCHO43405 550 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 AFPP02771 609 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CHRNB1P11230 501 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 ACO1P21399 889 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 TBXAS1P24557 533 aaPredicted RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 MAGEA9P43362 315 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 YWHAEP62258 255 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CETN1Q12798 172 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 PDGFRLQ15198 375 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 DPCR1Q3MIW9 517 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 HECTD3Q5T447 861 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 ARHGAP17Q68EM7 881 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 C1orf228Q6PIY5 440 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CREBRFQ8IUR6 639 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 MAML2Q8IZL2 1156 aaPredicted RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 GPT2Q8TD30 523 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 KAT5Q92993 513 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CHFRQ96EP1 664 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CCSER2Q9H7U1 834 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 PNPLA8Q9NP80 782 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 SPATA6Q9NWH7 488 aaPredicted RBP13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 SMPD4Q9NXE4 827 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 SCML2Q9UQR0 700 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 CPQQ9Y646 472 aa13.46□□□□□ -0.25
PRPF40A-203ENST00000448428 MYOFQ9NZM1 2061 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 RNF225M0QZC1 329 aaPredicted RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 MBL2P11226 248 aaPredicted RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 IFNAR2P48551 515 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 KIF11P52732 1056 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 MTAPQ13126 283 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 PON2Q15165 354 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 EML3Q32P44 896 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 RRAGAQ7L523 313 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 ALYREFQ86V81 257 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 ARHGEF19Q8IW93 802 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 PPM1KQ8N3J5 372 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 ANKRD52Q8NB46 1076 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 CNOT6LQ96LI5 555 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 ECT2Q9H8V3 914 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 TLR8Q9NR97 1041 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 RBM12Q9NTZ6 932 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 OSER1Q9NX31 292 aa13.45□□□□□ -0.26
PRPF40A-203ENST00000448428 ATG2BQ96BY7 2078 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 CYP26A1O43174 497 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 LAMTOR5O43504 91 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 SP9P0CG40 484 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 CD19P15391 556 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 HOXD11P31277 338 aaPredicted RBP13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 NBL1P41271 181 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 MRE11P49959 708 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 TUBP50607 506 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 SGO2Q562F6 1265 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 TMEM270Q6UE05 265 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 PIGZQ86VD9 579 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 TTC30AQ86WT1 665 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 ADGRG2Q8IZP9 1017 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 CPA6Q8N4T0 437 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 ZFRQ96KR1 1074 aaKnown RBP13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 UBXN6Q9BZV1 441 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 INTS2Q9H0H0 1204 aaKnown RBP13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 CHRDQ9H2X0 955 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 NMUR1Q9HB89 426 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 FBRSL1Q9HCM7 1045 aaKnown RBP13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 CFAP97Q9P2B7 532 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 KIAA1257Q9ULG3 409 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 PCDHB4Q9Y5E5 795 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 USP3Q9Y6I4 520 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 FANCMQ8IYD8 2048 aa13.44□□□□□ -0.26
PRPF40A-203ENST00000448428 A0A1W2PQH9 124 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TULP2O00295 520 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TRDMT1O14717 391 aaKnown RBP13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 SCAMP3O14828 347 aaKnown RBP13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TLR5O60602 858 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TBX18O95935 607 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 VDRP11473 427 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 ERCC5P28715 1186 aaPredicted RBP13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 GJA4P35212 333 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 GALK1P51570 392 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 AMPD2Q01433 879 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 GCNT1Q02742 428 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 GAS6Q14393 721 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TPD52L1Q16890 204 aaPredicted RBP13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 GOLGA7BQ2TAP0 167 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TMEM196Q5HYL7 178 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 RAB41Q5JT25 222 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 MAMSTRQ6ZN01 415 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 CCDC186Q7Z3E2 898 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 SCD5Q86SK9 330 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 DDX42Q86XP3 938 aaKnown RBP eCLIP13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 KIAA1958Q8N8K9 716 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 UBA3Q8TBC4 463 aa13.43□□□□□ -0.26
PRPF40A-203ENST00000448428 TFAP2BQ92481 460 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms