RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DPPA5A6NC42 116 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 PMM2O15305 246 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 OAS1P00973 400 aaKnown RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 LCP1P13796 627 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 STIP1P31948 543 aaKnown RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 CRADDP78560 199 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 LAMTOR4Q0VGL1 99 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 PTP4A2Q12974 167 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 RABGAP1LQ5R372 815 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 HEATR6Q6AI08 1181 aaKnown RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 RASSF3Q86WH2 238 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 FGD4Q96M96 766 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 CPXM1Q96SM3 734 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 CADM1Q9BY67 442 aaKnown RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 NMUR2Q9GZQ4 415 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 WDR35Q9P2L0 1181 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 GRID1Q9ULK0 1009 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 SNX9Q9Y5X1 595 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 SPATA31A6Q5VVP1 1343 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 B4GALT5O43286 388 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 CREB3O43889 395 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 PDGFRBP09619 1106 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 ATP4AP20648 1035 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 IL1R2P27930 398 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 TYK2P29597 1187 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 IRX1P78414 480 aaPredicted RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 PTPN11Q06124 597 aaPredicted RBP12.35□□□□□ -0.43
MSH6-204ENST00000445503 AP1B1Q10567 949 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 SCARA3Q6AZY7 606 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 LRRC74BQ6ZQY2 392 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 RAPH1Q70E73 1250 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 NMRK1Q9NWW6 199 aa12.35□□□□□ -0.43
MSH6-204ENST00000445503 ABCA3Q99758 1704 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 BST1Q10588 318 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 CUL3Q13618 768 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 ABHD15Q6UXT9 468 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 BBS12Q6ZW61 710 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SCUBE1Q8IWY4 988 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 EFCAB3Q8N7B9 438 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.34□□□□□ -0.43
MSH6-204ENST00000445503 PTPRN2Q92932 1015 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SERAC1Q96JX3 654 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 ZNF518BQ9C0D4 1074 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 MAP3K20Q9NYL2 800 aaKnown RBP12.34□□□□□ -0.43
MSH6-204ENST00000445503 MAST2Q6P0Q8 1798 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 TTLL13PA6NNM8 815 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 GSC2O15499 205 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 PLA2G6O60733 806 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 PGK2P07205 417 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 KCNA4P22459 653 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 ARL4AP40617 200 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SLC34A1Q06495 639 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 HIC1Q14526 733 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 TMEM132BQ14DG7 1078 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 EFHC2Q5JST6 749 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SH3PXD2AQ5TCZ1 1133 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 LRRC38Q5VT99 294 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 ANGEL2Q5VTE6 544 aaKnown RBP12.34□□□□□ -0.43
MSH6-204ENST00000445503 EFCAB12Q6NXP0 572 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 IZUMO2Q6UXV1 221 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 NKD2Q969F2 451 aaPredicted RBP12.34□□□□□ -0.43
MSH6-204ENST00000445503 KIF12Q96FN5 646 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 HPDLQ96IR7 371 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SAR1AQ9NR31 198 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 MICAL2O94851 1124 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 PSMG1O95456 288 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 HMGCRP04035 888 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 CCNB1P14635 433 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 EIF4BP23588 611 aaKnown RBP12.34□□□□□ -0.43
MSH6-204ENST00000445503 CCDC15Q0P6D6 951 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 TLDC1Q6P9B6 456 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 C4orf50Q6ZRC1 276 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 RINLQ6ZS11 566 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 TMEM130Q8N3G9 435 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 FAM49AQ9H0Q0 323 aaPredicted RBP12.34□□□□□ -0.43
MSH6-204ENST00000445503 CLUHO75153 1309 aa12.34□□□□□ -0.43
MSH6-204ENST00000445503 SIGLEC16A6NMB1 481 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 APOC4-APOC2K7ER74 178 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 NEMP1O14524 444 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 HSPA4LO95757 839 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 EGFRP00533 1210 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 APOC2P02655 101 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 GMPSP49915 693 aaPredicted RBP12.33□□□□□ -0.43
MSH6-204ENST00000445503 ZC3H12AQ5D1E8 599 aaKnown RBP12.33□□□□□ -0.43
MSH6-204ENST00000445503 EEF1DP3Q658K8 133 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 CES3Q6UWW8 571 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 DENND5BQ6ZUT9 1274 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 ACOT1Q86TX2 421 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 AGBL3Q8NEM8 1001 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 FAM172AQ8WUF8 416 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 UTP4Q969X6 686 aaKnown RBP12.33□□□□□ -0.43
MSH6-204ENST00000445503 CPB2Q96IY4 423 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 DNAJC16Q9Y2G8 782 aa12.33□□□□□ -0.43
MSH6-204ENST00000445503 RREB1Q92766 1687 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 ATP6V1C1P21283 382 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 CACNA2D1P54289 1103 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 POLNQ7Z5Q5 900 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 SCUBE3Q8IX30 993 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 RNF34Q969K3 372 aa12.33□□□□□ -0.44
MSH6-204ENST00000445503 PRR11Q96HE9 360 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms