RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZBED1O96006 694 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 CALB1P05937 261 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 LTBRP36941 435 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 USP46P62068 366 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 ITIH3Q06033 890 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 C1QBPQ07021 282 aaKnown RBP16.6■□□□□ 0.25
USP40-206ENST00000443711 ZNF268Q14587 947 aaPredicted RBP16.6■□□□□ 0.25
USP40-206ENST00000443711 SKIV2LQ15477 1246 aaKnown RBP16.6■□□□□ 0.25
USP40-206ENST00000443711 CYP4A22Q5TCH4 519 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 PM20D1Q6GTS8 502 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 OR6B2Q6IFH4 312 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 CES5AQ6NT32 575 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 MMS22LQ6ZRQ5 1243 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 GPR149Q86SP6 731 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 ZDHHC17Q8IUH5 632 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 LEMD2Q8NC56 503 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 FBXO32Q969P5 355 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 SLITRK1Q96PX8 696 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 CORO1BQ9BR76 489 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 C11orf70Q9BRQ4 267 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 ASAH2Q9NR71 780 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 SPTLC3Q9NUV7 552 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 STRIP2Q9ULQ0 834 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 EPN1Q9Y6I3 576 aaPredicted RBP16.6■□□□□ 0.25
USP40-206ENST00000443711 MYO16Q9Y6X6 1858 aa16.6■□□□□ 0.25
USP40-206ENST00000443711 FAM170AA1A519 330 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 EIF3CLB5ME19 914 aaKnown RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 NDUFA10O95299 355 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 IPO7O95373 1038 aaKnown RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 LCA5LO95447 670 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 ERBB2P04626 1255 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 USP17L7P0C7H9 530 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 PPP3CCP48454 512 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 DLX2Q07687 328 aaPredicted RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 TAF10Q12962 218 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 SPA17Q15506 151 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 PABPC1LQ4VXU2 614 aaKnown RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 C10orf76Q5T2E6 689 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 RAD9BQ6WBX8 426 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 MON1BQ7L1V2 547 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 SCUBE3Q8IX30 993 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 MCOLN2Q8IZK6 566 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 HS6ST3Q8IZP7 471 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 PDZD8Q8NEN9 1154 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 OVCA2Q8WZ82 227 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 IRGQQ8WZA9 623 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 TRIM11Q96F44 468 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 EIF3CQ99613 913 aaKnown RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 APOL5Q9BWW9 433 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 LRRC3Q9BY71 257 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 ADAM7Q9H2U9 754 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 WDR35Q9P2L0 1181 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 DNMT3BQ9UBC3 853 aaKnown RBP16.59■□□□□ 0.25
USP40-206ENST00000443711 TJP2Q9UDY2 1190 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 NENFQ9UMX5 172 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 BRWD1Q9NSI6 2320 aa16.59■□□□□ 0.25
USP40-206ENST00000443711 C2orf16Q68DN1 1984 aa16.58■□□□□ 0.25
USP40-206ENST00000443711 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 ZNF197O14709 1029 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 PAPSS1O43252 624 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 RHOP08100 348 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 H2AFZP0C0S5 128 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 MYL4P12829 197 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 CDC25CP30307 473 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 EPHA5P54756 1037 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 DAOAP59103 153 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 MRPS5P82675 430 aaKnown RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 PTP4A2Q12974 167 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 EFHC1Q5JVL4 640 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 ATAT1Q5SQI0 421 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 H2AFVQ71UI9 128 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 GRASPQ7Z6J2 395 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 MON1AQ86VX9 555 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 XYLT1Q86Y38 959 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 TMC8Q8IU68 726 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 ARHGAP18Q8N392 663 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 MSLNLQ96KJ4 702 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 GCNAQ96QF7 691 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 S1PR5Q9H228 398 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 UBE2ZQ9H832 354 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 ZNF334Q9HCZ1 680 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 LUC7LQ9NQ29 371 aaKnown RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 TLR8Q9NR97 1041 aaKnown RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 HCFC1R1Q9NWW0 138 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 TRPM5Q9NZQ8 1165 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 CHORDC1Q9UHD1 332 aaPredicted RBP16.58■□□□□ 0.24
USP40-206ENST00000443711 CD207Q9UJ71 328 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 DENND4CQ5VZ89 1909 aa16.58■□□□□ 0.24
USP40-206ENST00000443711 NOTCH4Q99466 2003 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 NCANO14594 1321 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 ARHGAP6O43182 974 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 F11P03951 625 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 MYBL1P10243 752 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 GABRR2P28476 465 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 SCNN1AP37088 669 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 MAGEA1P43355 309 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 PSEN1P49768 467 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 SLC6A3Q01959 620 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 MTF1Q14872 753 aa16.57■□□□□ 0.24
USP40-206ENST00000443711 C2CD6Q53TS8 623 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms