RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TTYH3Q9C0H2 523 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 C8orf33Q9H7E9 229 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-208ENST00000437607 IL21Q9HBE4 155 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 SIX2Q9NPC8 291 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.91□□□□□ -0.347e-8■■■■■ 186.3
PTPRF-208ENST00000437607 DPP3Q9NY33 737 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 RAB23Q9ULC3 237 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 LUC7L2Q9Y383 392 aaKnown RBP12.91□□□□□ -0.34
PTPRF-208ENST00000437607 ASB3Q9Y575 518 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 FHOD1Q9Y613 1164 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 CHD6Q8TD26 2715 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 ABCA7Q8IZY2 2146 aa12.91□□□□□ -0.34
PTPRF-208ENST00000437607 ANO9A1A5B4 782 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 EPHB6O15197 1021 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 LRP3O75074 770 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 KRT37O76014 449 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 CYP11A1P05108 521 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 P4HA1P13674 534 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ATF6P18850 670 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TBXAS1P24557 533 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ATICP31939 592 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 KRT9P35527 623 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ALDH1A3P47895 512 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 KPNA1P52294 538 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 RBP5P82980 135 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ZBED6P86452 979 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 CYP4F8P98187 520 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TNK2Q07912 1038 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 MYO1EQ12965 1108 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TBX2Q13207 712 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 LRRC32Q14392 662 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 PON2Q15165 354 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TSR1Q2NL82 804 aaKnown RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ARHGAP29Q52LW3 1261 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 DGKKQ5KSL6 1271 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 GPR158Q5T848 1215 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 CCDC186Q7Z3E2 898 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 RALGPS2Q86X27 583 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 CPLX3Q8WVH0 158 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TAF4BQ92750 862 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 SEMA4DQ92854 862 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 TRIM44Q96DX7 344 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 CHFRQ96EP1 664 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 PI4K2AQ9BTU6 479 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 EDEM3Q9BZQ6 932 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 NIF3L1Q9GZT8 377 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 NUCKS1Q9H1E3 243 aaKnown RBP12.9□□□□□ -0.34
PTPRF-208ENST00000437607 ATXN3LQ9H3M9 355 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 NLRC4Q9NPP4 1024 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 SEMA4GQ9NTN9 838 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 HSFX1Q9UBD0 423 aa12.9□□□□□ -0.34
PTPRF-208ENST00000437607 SLC30A4O14863 429 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 GDF9O60383 454 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ASS1P00966 412 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ADRB1P08588 477 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ODC1P11926 461 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 WEE1P30291 646 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 PNPLA4P41247 253 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 MFAP3P55082 362 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 MYL6P60660 151 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 TNNC1P63316 161 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 APBA1Q02410 837 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 SGSM1Q2NKQ1 1148 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 SLC39A12Q504Y0 691 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ZNF667Q5HYK9 610 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 HEATR6Q6AI08 1181 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 PKN3Q6P5Z2 889 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 C1orf228Q6PIY5 440 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 SCARA5Q6ZMJ2 495 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 PRR23CQ6ZRP0 262 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ENOSF1Q7L5Y1 443 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 LRRTM3Q86VH5 581 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 LONP2Q86WA8 852 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ARHGEF19Q8IW93 802 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 LRRC52Q8N7C0 313 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 LMO3Q8TAP4 145 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 NETO1Q8TDF5 533 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ZCWPW1Q9H0M4 648 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 SMG9Q9H0W8 520 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ABHD10Q9NUJ1 306 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 ZNHIT6Q9NWK9 470 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 OBP2AQ9NY56 170 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 SIX4Q9UIU6 781 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 DNAJC12Q9UKB3 198 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 CAPN11Q9UMQ6 739 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 AGAP1Q9UPQ3 857 aa12.89□□□□□ -0.35
PTPRF-208ENST00000437607 TNRC6BQ9UPQ9 1833 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 MYO18AQ92614 2054 aaKnown RBP12.89□□□□□ -0.35
PTPRF-208ENST00000437607 WDFY3Q8IZQ1 3526 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-208ENST00000437607 LRRC53A6NM62 1247 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 NOL4O94818 638 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 CNR2P34972 360 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 YWHAEP62258 255 aaKnown RBP12.88□□□□□ -0.35
PTPRF-208ENST00000437607 GCNT1Q02742 428 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 GOLGA8FQ08AF8 430 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 GOLGA8DPQ0D2H9 430 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 CSRP2Q16527 193 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 ARHGAP44Q17R89 818 aa12.88□□□□□ -0.35
PTPRF-208ENST00000437607 SV2CQ496J9 727 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms