RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ACP6Q9NPH0 428 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.68■□□□□ 0.74
SHH-203ENST00000435425 CNTN6Q9UQ52 1028 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 KIF26AQ9ULI4 1882 aaPredicted RBP19.68■□□□□ 0.74
SHH-203ENST00000435425 MUC3AQ02505 3323 aa19.68■□□□□ 0.74
SHH-203ENST00000435425 THAP12O43422 761 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 PNMA6AP0CW24 399 aaPredicted RBP19.67■□□□□ 0.74
SHH-203ENST00000435425 MBL2P11226 248 aaPredicted RBP19.67■□□□□ 0.74
SHH-203ENST00000435425 PGFP49763 221 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 PDE6CP51160 858 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 KIF11P52732 1056 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 PFKPQ01813 784 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 NFKBIBQ15653 356 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 CNGA2Q16280 664 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 SLC44A4Q53GD3 710 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 KLHDC7AQ5VTJ3 777 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 DPY19L2P1Q6NXN4 242 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 LCLAT1Q6UWP7 414 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 FLCNQ8NFG4 579 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 TTC8Q8TAM2 541 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 IRF7Q92985 503 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 CCSER2Q9H7U1 834 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 KIF9Q9HAQ2 790 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 ARHGEF3Q9NR81 526 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 TLR8Q9NR97 1041 aaKnown RBP19.67■□□□□ 0.74
SHH-203ENST00000435425 HEBP1Q9NRV9 189 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 THG1LQ9NWX6 298 aaKnown RBP19.67■□□□□ 0.74
SHH-203ENST00000435425 SMPD4Q9NXE4 827 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 OBP2AQ9NY56 170 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 SCML2Q9UQR0 700 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 FHOD1Q9Y613 1164 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 COL4A3Q01955 1670 aa19.67■□□□□ 0.74
SHH-203ENST00000435425 FAM92AA1XBS5 289 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 XPO1O14980 1071 aaKnown RBP19.66■□□□□ 0.74
SHH-203ENST00000435425 GNA15P30679 374 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 RGS7P49802 495 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 TKTL1P51854 596 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 UBXN1Q04323 297 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 STILQ15468 1287 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 HECTD3Q5T447 861 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 RIN3Q8TB24 985 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 CSGALNACT1Q8TDX6 532 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 SH3RF2Q8TEC5 729 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 SHC3Q92529 594 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 SECISBP2LQ93073 1101 aaKnown RBP19.66■□□□□ 0.74
SHH-203ENST00000435425 UBXN6Q9BZV1 441 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 NACA2Q9H009 215 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 LRRC4Q9HBW1 653 aa19.66■□□□□ 0.74
SHH-203ENST00000435425 A0A1W2PQH9 124 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 FOXN3O00409 490 aaPredicted RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 PIK3R2O00459 728 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 CHADO15335 359 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 COCHO43405 550 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 MED7O43513 233 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 OAS1P00973 400 aaKnown RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 ZDHHC11BP0C7U3 371 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 SETSIPP0DME0 302 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 LCP1P13796 627 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 FCHO2Q0JRZ9 810 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 ZNF268Q14587 947 aaPredicted RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 DRAP1Q14919 205 aaPredicted RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 IQCB1Q15051 598 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 MLF2Q15773 248 aaPredicted RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 ARHGAP29Q52LW3 1261 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 CC2D1AQ6P1N0 951 aaPredicted RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 BMP8AQ7Z5Y6 402 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 SUGP1Q8IWZ8 645 aaKnown RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 FBXL6Q8N531 539 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 ZNF606Q8WXB4 792 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 NDRG1Q92597 394 aaKnown RBP19.65■□□□□ 0.74
SHH-203ENST00000435425 NMUR1Q9HB89 426 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 CBX8Q9HC52 389 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 GKN1Q9NS71 199 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 NAGPAQ9UK23 515 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 CPQQ9Y646 472 aa19.65■□□□□ 0.74
SHH-203ENST00000435425 LGALS16A8MUM7 142 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 UCHL3P15374 230 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 PFKLP17858 780 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 ADIGQ0VDE8 80 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 MTF1Q14872 753 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 SYCP1Q15431 976 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 PKDCCQ504Y2 493 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 SNX30Q5VWJ9 437 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 TRIM68Q6AZZ1 485 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 DENND1BQ6P3S1 775 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 TPRG1Q6ZUI0 275 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 LUZP1Q86V48 1076 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 DNASE1L2Q92874 299 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 ULBP1Q9BZM6 244 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 TBC1D17Q9HA65 648 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 FAM207AQ9NSI2 230 aaPredicted RBP19.64■□□□□ 0.73
SHH-203ENST00000435425 OSER1Q9NX31 292 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 NUDT5Q9UKK9 219 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 ARHGAP26Q9UNA1 814 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 USP3Q9Y6I4 520 aa19.64■□□□□ 0.73
SHH-203ENST00000435425 COL4A2P08572 1712 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 LEFTY2O00292 366 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 TBX18O95935 607 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 RARGP13631 454 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 CD72P21854 359 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms