RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GLI1P08151 1106 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 KRT3P12035 628 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 HOXB8P17481 243 aaPredicted RBP10.61□□□□□ -0.71
CD44-207ENST00000425428 CDC25CP30307 473 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 SCNN1AP37088 669 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 GABRB2P47870 512 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 SLC6A3Q01959 620 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 ARHGAP15Q53QZ3 475 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 LILRA6Q6PI73 481 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 RSRC2Q7L4I2 434 aaKnown RBP10.61□□□□□ -0.71
CD44-207ENST00000425428 MON1AQ86VX9 555 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 TMEM139Q8IV31 216 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 SCUBE3Q8IX30 993 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 EFHBQ8N7U6 833 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 C3orf20Q8ND61 904 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 CPXM1Q96SM3 734 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 NCAPGQ9BPX3 1015 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 AVENQ9NQS1 362 aaPredicted RBP10.61□□□□□ -0.71
CD44-207ENST00000425428 STAP1Q9ULZ2 295 aa10.61□□□□□ -0.71
CD44-207ENST00000425428 EPOPA6NHQ4 379 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PIK3R2O00459 728 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 BEST1O76090 585 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 CFHP08603 1231 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 USP17L7P0C7H9 530 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 EPCAMP16422 314 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 GBP1P32455 592 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 MRPS5P82675 430 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 MTF1Q14872 753 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 GRIN2CQ14957 1233 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 CCDC142Q17RM4 750 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PTPN20Q4JDL3 420 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 TCEAL5Q5H9L2 206 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PDZD4Q76G19 769 aaPredicted RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 SND1Q7KZF4 910 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-207ENST00000425428 MON1BQ7L1V2 547 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 DNAJB7Q7Z6W7 309 aaPredicted RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 SCML4Q8N228 414 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 WDTC1Q8N5D0 677 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ACRBPQ8NEB7 543 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 SLC22A17Q8WUG5 538 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 MRPS31Q92665 395 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 PSMG2Q969U7 264 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 FAM161BQ96MY7 647 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ALS2CR12Q96Q35 445 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 DESI2Q9BSY9 194 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ULBP1Q9BZM6 244 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ABCC13Q9NSE7 274 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 OLA1Q9NTK5 396 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 ASNSD1Q9NWL6 643 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 RRN3Q9NYV6 651 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ZMYM5Q9UJ78 669 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 SCML2Q9UQR0 700 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PAXBP1Q9Y5B6 917 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PCDHGC5Q9Y5F6 944 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ADGRG1Q9Y653 693 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.6□□□□□ -0.71
CD44-207ENST00000425428 GREB1Q4ZG55 1949 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 CCDC195A0A1B0GUA6 201 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 MYO1FO00160 1098 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 CCL16O15467 120 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 SOAT2O75908 522 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ERBB2P04626 1255 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 POU3F3P20264 500 aaPredicted RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 RNASE9P60153 205 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 YWHAZP63104 245 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 SKIV2LQ15477 1246 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 RAB41Q5JT25 222 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 SDHAF4Q5VUM1 108 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 FAM183BPQ6ZVS7 135 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 ADGRD2Q7Z7M1 963 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 SYCE1Q8N0S2 351 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 GPR152Q8TDT2 470 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 RFFLQ8WZ73 363 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 TRMT2BQ96GJ1 504 aaKnown RBP10.6□□□□□ -0.71
CD44-207ENST00000425428 NUP85Q9BW27 656 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PRKD2Q9BZL6 878 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 THAP2Q9H0W7 228 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 POPDC2Q9HBU9 364 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 TAS2R14Q9NYV8 317 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 PPP2R2CQ9Y2T4 447 aa10.6□□□□□ -0.71
CD44-207ENST00000425428 A0A0A6YYK5 440 aaPredicted RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 SIGLEC16A6NMB1 481 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 TULP2O00295 520 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 RNF8O76064 485 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 LTFP02788 710 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 ATF6P18850 670 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 RRM1P23921 792 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 SDC4P31431 198 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 RPL34P49207 117 aaKnown RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 GPR15P49685 360 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 GSCP56915 257 aaPredicted RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 DAOAP59103 153 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 YWHAGP61981 247 aaKnown RBP eCLIP10.59□□□□□ -0.71
CD44-207ENST00000425428 TAF10Q12962 218 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 ODF2Q5BJF6 829 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 HABP4Q5JVS0 413 aaKnown RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 PM20D1Q6GTS8 502 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 XYLT1Q86Y38 959 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 RNF10Q8N5U6 811 aaKnown RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 TTC9BQ8N6N2 239 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms